def scriptFO():
screen.clear()
screen.border(0)
screen.addstr(2, 2, "This is Find Orthologues")
screen.addstr(4, 4, "Please enter a input file for Find Orthologues")
screen.addstr(9, 4, "Please name the output file for Find Orthologues")
screen.refresh()
secondClass = class2()
userInput = screen.getstr(6, 10, 60)
userOutput = screen.getstr(11, 10, 60)
try:
secondClass.zoekOrthologen(userInput, userOutput)
screen.clear()
screen.border(0)
screen.addstr(2, 4, "Find Orthologues succes!")
screen.refresh()
time.sleep(3)
except:
curses.flash()
show_error("Invalid file name. Try again.")
firstClass = class1()
userInput = screen.getstr(6, 10, 60)
MEMEpath = screen.getstr(11, 10, 60)
userOutput = "GF_output"
try:
screen.clear()
screen.border(0)
screen.addstr(2, 2, "0% complete...")
screen.refresh()
time.sleep(1)
firstClass.filterLPs(userInput, userOutput)
screen.clear()
screen.border(0)
screen.addstr(2, 2, "25% complete...")
screen.refresh()
secondClass = class2()
userOutput2 = "FO_output"
secondClass.zoekOrthologen(userOutput+".txt", userOutput2)
screen.clear()
screen.border(0)
screen.addstr(2, 2, "50% complete...")
screen.refresh()
thirdClass = class3()
userOutput3 = "MS_output_WCFS1_glc1"
userOutput4 = "MS_output_NC8_glc1"
userOutput5 = "MS_output_WCFS1_glc2"
userOutput6 = "MS_output_NC8_glc2"
thirdClass.motifSearch(userOutput2+".txt", userOutput3, userOutput4, userOutput5, userOutput6)
screen.clear()
screen.border(0)
screen.addstr(2, 2, "75% complete...")
