import go
go.loadAnnotation()
go.loadGO()
from sets import Set
terms=["GO:0030036",
"GO:0043037",
"GO:0030528",
"GO:0016044",
"GO:0006873",
"GO:0006281",
"GO:0042026",
"GO:0007047",
"GO:0000754",
"GO:0008202",
"GO:0007017"]
booneGenes=open("genes.txt").read().split("\n")
file=open("terms_with_genes.txt","w")
#for each term find all genes that map to this term and those that are from boone's paper
for term in terms:
genes=go.findGenes([term]).keys()
#test
t=go.GOTermFinder(genes, aspect="P")
#t=go.findTerms(genes)
#if term not in t.keys():
# print "!!!!!ERROR!!!!!", term, t
#print genes
genesBoone=filter(lambda a: go.mapGeneName(a) in genes, booneGenes)
#t1=go.GOTermFinder(genesBoone, aspect="P")
#print genesBoone
