Example #1
0
def test_npz_reading_writing(tmp_path):
    """Test reading and saveing npz"""

    if IS_PYPY:
        return  # no support for npz format :(

    im2 = np.ones((10, 10), np.uint8) * 2
    im3 = np.ones((10, 10, 10), np.uint8) * 3
    im4 = np.ones((10, 10, 10, 10), np.uint8) * 4

    filename1 = tmp_path / "test_npz.npz"

    # One image
    imageio.imsave(filename1, im2)
    im = imageio.imread(filename1)
    ims = imageio.mimread(filename1)
    assert (im == im2).all()
    assert len(ims) == 1

    # Multiple images
    imageio.mimsave(filename1, [im2, im2, im2])
    im = imageio.imread(filename1)
    ims = imageio.mimread(filename1)
    assert (im == im2).all()
    assert len(ims) == 3

    # Volumes
    imageio.mvolsave(filename1, [im3, im3])
    im = imageio.volread(filename1)
    ims = imageio.mvolread(filename1)
    assert (im == im3).all()
    assert len(ims) == 2

    # Mixed
    W = imageio.save(filename1)
    assert W.format.name == "NPZ"
    W.append_data(im2)
    W.append_data(im3)
    W.append_data(im4)
    pytest.raises(RuntimeError, W.set_meta_data, {})  # no meta data support
    W.close()
    #
    R = imageio.read(filename1)
    assert R.format.name == "NPZ"
    ims = list(R)  # == [im for im in R]
    assert (ims[0] == im2).all()
    assert (ims[1] == im3).all()
    assert (ims[2] == im4).all()
    # Fail
    pytest.raises(IndexError, R.get_data, -1)
    pytest.raises(IndexError, R.get_data, 3)
    pytest.raises(RuntimeError, R.get_meta_data, None)  # no meta data support
    pytest.raises(RuntimeError, R.get_meta_data, 0)  # no meta data support
Example #2
0
def test_npz_reading_writing():
    """ Test reading and saveing npz """
    
    if IS_PYPY:
        return  # no support for npz format :(
    
    im2 = np.ones((10, 10), np.uint8) * 2
    im3 = np.ones((10, 10, 10), np.uint8) * 3
    im4 = np.ones((10, 10, 10, 10), np.uint8) * 4
    
    filename1 = os.path.join(test_dir, 'test_npz.npz')

    # One image
    imageio.imsave(filename1, im2)
    im = imageio.imread(filename1)
    ims = imageio.mimread(filename1)
    assert (im == im2).all()
    assert len(ims) == 1
    
    # Multiple images
    imageio.mimsave(filename1, [im2, im2, im2])
    im = imageio.imread(filename1)
    ims = imageio.mimread(filename1)
    assert (im == im2).all()
    assert len(ims) == 3
    
    # Volumes
    imageio.mvolsave(filename1, [im3, im3])
    im = imageio.volread(filename1)
    ims = imageio.mvolread(filename1)
    assert (im == im3).all()
    assert len(ims) == 2
    
    # Mixed
    W = imageio.save(filename1)
    assert W.format.name == 'NPZ'
    W.append_data(im2)
    W.append_data(im3)
    W.append_data(im4)
    raises(RuntimeError, W.set_meta_data, {})  # no meta data support
    W.close()
    #
    R = imageio.read(filename1)
    assert R.format.name == 'NPZ'
    ims = list(R)  # == [im for im in R]
    assert (ims[0] == im2).all()
    assert (ims[1] == im3).all()
    assert (ims[2] == im4).all()
    # Fail
    raises(IndexError, R.get_data, -1)
    raises(IndexError, R.get_data, 3)
    raises(RuntimeError, R.get_meta_data, None)  # no meta data support
    raises(RuntimeError, R.get_meta_data, 0)  # no meta data support
Example #3
0
def test_functions():
    """ Test the user-facing API functions """

    # Test help(), it prints stuff, so we just check whether that goes ok
    imageio.help()  # should print overview
    imageio.help("PNG")  # should print about PNG

    fname1 = get_remote_file("images/chelsea.png", test_dir)
    fname2 = fname1[:-3] + "jpg"
    fname3 = fname1[:-3] + "notavalidext"
    open(fname3, "wb")

    # Test read()
    R1 = imageio.read(fname1)
    R2 = imageio.read(fname1, "png")
    assert R1.format is R2.format
    # Fail
    raises(ValueError, imageio.read, fname3)  # existing but not readable
    raises(FileNotFoundError, imageio.read, "notexisting.barf")
    raises(IndexError, imageio.read, fname1, "notexistingformat")

    # Test save()
    W1 = imageio.save(fname2)
    W2 = imageio.save(fname2, "JPG")
    W1.close()
    W2.close()
    assert W1.format is W2.format
    # Fail
    raises(FileNotFoundError, imageio.save,
           "~/dirdoesnotexist/wtf.notexistingfile")

    # Test imread()
    im1 = imageio.imread(fname1)
    im2 = imageio.imread(fname1, "png")
    assert im1.shape[2] == 3
    assert np.all(im1 == im2)

    # Test imsave()
    if os.path.isfile(fname2):
        os.remove(fname2)
    assert not os.path.isfile(fname2)
    imageio.imsave(fname2, im1[:, :, 0])
    imageio.imsave(fname2, im1)
    assert os.path.isfile(fname2)

    # Test mimread()
    fname3 = get_remote_file("images/newtonscradle.gif", test_dir)
    ims = imageio.mimread(fname3)
    assert isinstance(ims, list)
    assert len(ims) > 1
    assert ims[0].ndim == 3
    assert ims[0].shape[2] in (1, 3, 4)
    # Test protection
    with raises(RuntimeError):
        imageio.mimread("imageio:chelsea.png", "dummy", length=np.inf)

    if IS_PYPY:
        return  # no support for npz format :(

    # Test mimsave()
    fname5 = fname3[:-4] + "2.npz"
    if os.path.isfile(fname5):
        os.remove(fname5)
    assert not os.path.isfile(fname5)
    imageio.mimsave(fname5, [im[:, :, 0] for im in ims])
    imageio.mimsave(fname5, ims)
    assert os.path.isfile(fname5)

    # Test volread()
    fname4 = get_remote_file("images/stent.npz", test_dir)
    vol = imageio.volread(fname4)
    assert vol.ndim == 3
    assert vol.shape[0] == 256
    assert vol.shape[1] == 128
    assert vol.shape[2] == 128

    # Test volsave()
    volc = np.zeros((10, 10, 10, 3), np.uint8)  # color volume
    fname6 = os.path.join(test_dir, "images", "stent2.npz")
    if os.path.isfile(fname6):
        os.remove(fname6)
    assert not os.path.isfile(fname6)
    imageio.volsave(fname6, volc)
    imageio.volsave(fname6, vol)
    assert os.path.isfile(fname6)

    # Test mvolread()
    vols = imageio.mvolread(fname4)
    assert isinstance(vols, list)
    assert len(vols) == 1
    assert vols[0].shape == vol.shape

    # Test mvolsave()
    if os.path.isfile(fname6):
        os.remove(fname6)
    assert not os.path.isfile(fname6)
    imageio.mvolsave(fname6, [volc, volc])
    imageio.mvolsave(fname6, vols)
    assert os.path.isfile(fname6)

    # Fail for save functions
    raises(ValueError, imageio.imsave, fname2, np.zeros((100, 100, 5)))
    raises(ValueError, imageio.imsave, fname2, 42)
    raises(ValueError, imageio.mimsave, fname5, [np.zeros((100, 100, 5))])
    raises(ValueError, imageio.mimsave, fname5, [42])
    raises(ValueError, imageio.volsave, fname6, np.zeros((100, 100, 100, 40)))
    raises(ValueError, imageio.volsave, fname6, 42)
    raises(ValueError, imageio.mvolsave, fname6, [np.zeros((90, 90, 90, 40))])
    raises(ValueError, imageio.mvolsave, fname6, [42])
Example #4
0
def test_functions():
    """ Test the user-facing API functions """
    
    # Test help(), it prints stuff, so we just check whether that goes ok
    imageio.help()  # should print overview
    imageio.help('PNG')  # should print about PNG
    
    fname1 = get_remote_file('images/chelsea.png', test_dir)
    fname2 = fname1[:-3] + 'jpg'
    fname3 = fname1[:-3] + 'notavalidext'
    open(fname3, 'wb')
    
    # Test read()
    R1 = imageio.read(fname1)
    R2 = imageio.read(fname1, 'png')
    assert R1.format is R2.format
    # Fail
    raises(ValueError, imageio.read, fname3)  # existing but not readable
    raises(IOError, imageio.read, 'notexisting.barf')
    raises(IndexError, imageio.read, fname1, 'notexistingformat')
    
    # Test save()
    W1 = imageio.save(fname2)
    W2 = imageio.save(fname2, 'JPG')
    assert W1.format is W2.format
    # Fail
    raises(ValueError, imageio.save, 'wtf.notexistingfile')
    
    # Test imread()
    im1 = imageio.imread(fname1)
    im2 = imageio.imread(fname1, 'png')
    assert im1.shape[2] == 3
    assert np.all(im1 == im2)
    
    # Test imsave()
    if os.path.isfile(fname2):
        os.remove(fname2)
    assert not os.path.isfile(fname2)
    imageio.imsave(fname2, im1[:, :, 0])
    imageio.imsave(fname2, im1)
    assert os.path.isfile(fname2)
    
    # Test mimread()
    fname3 = get_remote_file('images/newtonscradle.gif', test_dir)
    ims = imageio.mimread(fname3)
    assert isinstance(ims, list)
    assert len(ims) > 1
    assert ims[0].ndim == 3
    assert ims[0].shape[2] in (1, 3, 4)
    
    if IS_PYPY:
        return  # no support for npz format :(
    
    # Test mimsave()
    fname5 = fname3[:-4] + '2.npz'
    if os.path.isfile(fname5):
        os.remove(fname5)
    assert not os.path.isfile(fname5)
    imageio.mimsave(fname5, [im[:, :, 0] for im in ims])
    imageio.mimsave(fname5, ims)
    assert os.path.isfile(fname5)
    
    # Test volread()
    fname4 = get_remote_file('images/stent.npz', test_dir)
    vol = imageio.volread(fname4)
    assert vol.ndim == 3
    assert vol.shape[0] == 256
    assert vol.shape[1] == 128
    assert vol.shape[2] == 128
    
    # Test volsave()
    volc = np.zeros((10, 10, 10, 3), np.uint8)  # color volume
    fname6 = fname4[:-4] + '2.npz'
    if os.path.isfile(fname6):
        os.remove(fname6)
    assert not os.path.isfile(fname6)
    imageio.volsave(fname6, volc)
    imageio.volsave(fname6, vol)
    assert os.path.isfile(fname6)
    
    # Test mvolread()
    vols = imageio.mvolread(fname4)
    assert isinstance(vols, list)
    assert len(vols) == 1
    assert vols[0].shape == vol.shape
    
    # Test mvolsave()
    if os.path.isfile(fname6):
        os.remove(fname6)
    assert not os.path.isfile(fname6)
    imageio.mvolsave(fname6, [volc, volc])
    imageio.mvolsave(fname6, vols)
    assert os.path.isfile(fname6)
    
    # Fail for save functions
    raises(ValueError, imageio.imsave, fname2, np.zeros((100, 100, 5)))
    raises(ValueError, imageio.imsave, fname2, 42)
    raises(ValueError, imageio.mimsave, fname5, [np.zeros((100, 100, 5))])
    raises(ValueError, imageio.mimsave, fname5, [42])
    raises(ValueError, imageio.volsave, fname4, np.zeros((100, 100, 100, 40)))
    raises(ValueError, imageio.volsave, fname4, 42)
    raises(ValueError, imageio.mvolsave, fname4, [np.zeros((90, 90, 90, 40))])
    raises(ValueError, imageio.mvolsave, fname4, [42])
Example #5
0
def test_functions(test_images, tmp_path):
    """Test the user-facing API functions"""

    # Test help(), it prints stuff, so we just check whether that goes ok
    imageio.help()  # should print overview
    imageio.help("PNG")  # should print about PNG

    fname1 = test_images / "chelsea.png"
    fname2 = tmp_path / fname1.with_suffix(".jpg").name
    fname3 = tmp_path / fname1.with_suffix(".notavalidext").name
    open(fname3, "wb")

    # Test read()
    R1 = imageio.read(fname1)
    R2 = imageio.read(fname1, "png")

    # this tests if the highest priority png plugin and the highest
    # priority fallback plugin match.
    # Do we really what to enforce this?
    assert type(R1) is type(R2)

    raises(ValueError, imageio.read, fname3)  # existing but not readable
    raises(IndexError, imageio.read, fname1, "notexistingformat")

    # Note: This is actually a test of Requests. We should probably
    # migrate or remove it.
    raises(FileNotFoundError, imageio.read, "notexisting.barf")

    # Test save()
    W1 = imageio.save(fname2)
    W2 = imageio.save(fname2, "JPG")
    W1.close()
    W2.close()
    assert type(W1) is type(W2)
    # Fail
    raises(FileNotFoundError, imageio.save,
           "~/dirdoesnotexist/wtf.notexistingfile")

    # Test imread()
    im1 = imageio.imread(fname1)
    im2 = imageio.imread(fname1, "png")
    assert im1.shape[2] == 3
    assert np.all(im1 == im2)

    # Test imsave()
    if os.path.isfile(fname2):
        os.remove(fname2)
    assert not os.path.isfile(fname2)
    imageio.imsave(fname2, im1[:, :, 0])
    imageio.imsave(fname2, im1)
    assert os.path.isfile(fname2)

    # Test mimread()
    fname3 = test_images / "newtonscradle.gif"
    ims = imageio.mimread(fname3)
    assert isinstance(ims, list)
    assert len(ims) > 1
    assert ims[0].ndim == 3
    assert ims[0].shape[2] in (1, 3, 4)
    # Test protection
    with raises(RuntimeError):
        imageio.mimread(test_images / "chelsea.png", "dummy", length=np.inf)

    if IS_PYPY:
        return  # no support for npz format :(

    # Test mimsave()
    fname5 = str(fname3.with_suffix(""))
    fname5 += "2.npz"
    if os.path.isfile(fname5):
        os.remove(fname5)
    assert not os.path.isfile(fname5)
    imageio.mimsave(fname5, [im[:, :, 0] for im in ims])
    imageio.mimsave(fname5, ims)
    assert os.path.isfile(fname5)

    # Test volread()
    fname4 = test_images / "stent.npz"
    vol = imageio.volread(fname4)
    assert vol.ndim == 3
    assert vol.shape[0] == 256
    assert vol.shape[1] == 128
    assert vol.shape[2] == 128

    # Test volsave()
    volc = np.zeros((10, 10, 10, 3), np.uint8)  # color volume
    fname6 = tmp_path / "stent2.npz"
    if os.path.isfile(fname6):
        os.remove(fname6)
    assert not os.path.isfile(fname6)
    imageio.volsave(fname6, volc)
    imageio.volsave(fname6, vol)
    assert os.path.isfile(fname6)

    # Test mvolread()
    vols = imageio.mvolread(fname4)
    assert isinstance(vols, list)
    assert len(vols) == 1
    assert vols[0].shape == vol.shape

    # Test mvolsave()
    if os.path.isfile(fname6):
        os.remove(fname6)
    assert not os.path.isfile(fname6)
    imageio.mvolsave(fname6, [volc, volc])
    imageio.mvolsave(fname6, vols)
    assert os.path.isfile(fname6)

    # Fail for save functions
    raises(ValueError, imageio.imsave, fname2, np.zeros((100, 100, 5)))
    raises(ValueError, imageio.imsave, fname2, 42)
    raises(ValueError, imageio.mimsave, fname5, [np.zeros((100, 100, 5))])
    raises(ValueError, imageio.mimsave, fname5, [42])
    raises(ValueError, imageio.volsave, fname6, np.zeros((100, 100, 100, 40)))
    raises(ValueError, imageio.volsave, fname6, 42)
    raises(ValueError, imageio.mvolsave, fname6, [np.zeros((90, 90, 90, 40))])
    raises(ValueError, imageio.mvolsave, fname6, [42])
Example #6
0
def test_functions():
    """ Test the user-facing API functions """
    
    # Test help(), it prints stuff, so we just check whether that goes ok
    imageio.help()  # should print overview
    imageio.help('PNG')  # should print about PNG
    
    fname1 = get_remote_file('images/chelsea.png', test_dir)
    fname2 = fname1[:-3] + 'jpg'
    fname3 = fname1[:-3] + 'notavalidext'
    open(fname3, 'wb')
    
    # Test read()
    R1 = imageio.read(fname1)
    R2 = imageio.read(fname1, 'png')
    assert R1.format is R2.format
    # Fail
    raises(ValueError, imageio.read, fname3)  # existing but not readable
    raises(IOError, imageio.read, 'notexisting.barf')
    raises(IndexError, imageio.read, fname1, 'notexistingformat')
    
    # Test save()
    W1 = imageio.save(fname2)
    W2 = imageio.save(fname2, 'JPG')
    assert W1.format is W2.format
    # Fail
    raises(ValueError, imageio.save, 'wtf.notexistingfile')
    
    # Test imread()
    im1 = imageio.imread(fname1)
    im2 = imageio.imread(fname1, 'png')
    assert im1.shape[2] == 3
    assert np.all(im1 == im2)
    
    # Test imsave()
    if os.path.isfile(fname2):
        os.remove(fname2)
    assert not os.path.isfile(fname2)
    imageio.imsave(fname2, im1[:, :, 0])
    imageio.imsave(fname2, im1)
    assert os.path.isfile(fname2)
    
    # Test mimread()
    fname3 = get_remote_file('images/newtonscradle.gif', test_dir)
    ims = imageio.mimread(fname3)
    assert isinstance(ims, list)
    assert len(ims) > 1
    assert ims[0].ndim == 3
    assert ims[0].shape[2] in (1, 3, 4)
    
    if IS_PYPY:
        return  # no support for npz format :(
    
    # Test mimsave()
    fname5 = fname3[:-4] + '2.npz'
    if os.path.isfile(fname5):
        os.remove(fname5)
    assert not os.path.isfile(fname5)
    imageio.mimsave(fname5, [im[:, :, 0] for im in ims])
    imageio.mimsave(fname5, ims)
    assert os.path.isfile(fname5)
    
    # Test volread()
    fname4 = get_remote_file('images/stent.npz', test_dir)
    vol = imageio.volread(fname4)
    assert vol.ndim == 3
    assert vol.shape[0] == 256
    assert vol.shape[1] == 128
    assert vol.shape[2] == 128
    
    # Test volsave()
    volc = np.zeros((10, 10, 10, 3), np.uint8)  # color volume
    fname6 = fname4[:-4] + '2.npz'
    if os.path.isfile(fname6):
        os.remove(fname6)
    assert not os.path.isfile(fname6)
    imageio.volsave(fname6, volc)
    imageio.volsave(fname6, vol)
    assert os.path.isfile(fname6)
    
    # Test mvolread()
    vols = imageio.mvolread(fname4)
    assert isinstance(vols, list)
    assert len(vols) == 1
    assert vols[0].shape == vol.shape
    
    # Test mvolsave()
    if os.path.isfile(fname6):
        os.remove(fname6)
    assert not os.path.isfile(fname6)
    imageio.mvolsave(fname6, [volc, volc])
    imageio.mvolsave(fname6, vols)
    assert os.path.isfile(fname6)
    
    # Fail for save functions
    raises(ValueError, imageio.imsave, fname2, np.zeros((100, 100, 5)))
    raises(ValueError, imageio.imsave, fname2, 42)
    raises(ValueError, imageio.mimsave, fname5, [np.zeros((100, 100, 5))])
    raises(ValueError, imageio.mimsave, fname5, [42])
    raises(ValueError, imageio.volsave, fname4, np.zeros((100, 100, 100, 40)))
    raises(ValueError, imageio.volsave, fname4, 42)
    raises(ValueError, imageio.mvolsave, fname4, [np.zeros((90, 90, 90, 40))])
    raises(ValueError, imageio.mvolsave, fname4, [42])
Example #7
0
def test_functions():
    """ Test the user-facing API functions """

    # Test help(), it prints stuff, so we just check whether that goes ok
    imageio.help()  # should print overview
    imageio.help("PNG")  # should print about PNG

    fname1 = get_remote_file("images/chelsea.png", test_dir)
    fname2 = fname1[:-3] + "jpg"
    fname3 = fname1[:-3] + "notavalidext"
    open(fname3, "wb")

    # Test read()
    R1 = imageio.read(fname1)
    R2 = imageio.read(fname1, "png")
    assert R1.format is R2.format
    # Fail
    raises(ValueError, imageio.read, fname3)  # existing but not readable
    raises(FileNotFoundError, imageio.read, "notexisting.barf")
    raises(IndexError, imageio.read, fname1, "notexistingformat")

    # Test save()
    W1 = imageio.save(fname2)
    W2 = imageio.save(fname2, "JPG")
    W1.close()
    W2.close()
    assert W1.format is W2.format
    # Fail
    raises(FileNotFoundError, imageio.save, "~/dirdoesnotexist/wtf.notexistingfile")

    # Test imread()
    im1 = imageio.imread(fname1)
    im2 = imageio.imread(fname1, "png")
    assert im1.shape[2] == 3
    assert np.all(im1 == im2)

    # Test imsave()
    if os.path.isfile(fname2):
        os.remove(fname2)
    assert not os.path.isfile(fname2)
    imageio.imsave(fname2, im1[:, :, 0])
    imageio.imsave(fname2, im1)
    assert os.path.isfile(fname2)

    # Test mimread()
    fname3 = get_remote_file("images/newtonscradle.gif", test_dir)
    ims = imageio.mimread(fname3)
    assert isinstance(ims, list)
    assert len(ims) > 1
    assert ims[0].ndim == 3
    assert ims[0].shape[2] in (1, 3, 4)
    # Test protection
    with raises(RuntimeError):
        imageio.mimread("imageio:chelsea.png", "dummy", length=np.inf)

    if IS_PYPY:
        return  # no support for npz format :(

    # Test mimsave()
    fname5 = fname3[:-4] + "2.npz"
    if os.path.isfile(fname5):
        os.remove(fname5)
    assert not os.path.isfile(fname5)
    imageio.mimsave(fname5, [im[:, :, 0] for im in ims])
    imageio.mimsave(fname5, ims)
    assert os.path.isfile(fname5)

    # Test volread()
    fname4 = get_remote_file("images/stent.npz", test_dir)
    vol = imageio.volread(fname4)
    assert vol.ndim == 3
    assert vol.shape[0] == 256
    assert vol.shape[1] == 128
    assert vol.shape[2] == 128

    # Test volsave()
    volc = np.zeros((10, 10, 10, 3), np.uint8)  # color volume
    fname6 = os.path.join(test_dir, "images", "stent2.npz")
    if os.path.isfile(fname6):
        os.remove(fname6)
    assert not os.path.isfile(fname6)
    imageio.volsave(fname6, volc)
    imageio.volsave(fname6, vol)
    assert os.path.isfile(fname6)

    # Test mvolread()
    vols = imageio.mvolread(fname4)
    assert isinstance(vols, list)
    assert len(vols) == 1
    assert vols[0].shape == vol.shape

    # Test mvolsave()
    if os.path.isfile(fname6):
        os.remove(fname6)
    assert not os.path.isfile(fname6)
    imageio.mvolsave(fname6, [volc, volc])
    imageio.mvolsave(fname6, vols)
    assert os.path.isfile(fname6)

    # Fail for save functions
    raises(ValueError, imageio.imsave, fname2, np.zeros((100, 100, 5)))
    raises(ValueError, imageio.imsave, fname2, 42)
    raises(ValueError, imageio.mimsave, fname5, [np.zeros((100, 100, 5))])
    raises(ValueError, imageio.mimsave, fname5, [42])
    raises(ValueError, imageio.volsave, fname6, np.zeros((100, 100, 100, 40)))
    raises(ValueError, imageio.volsave, fname6, 42)
    raises(ValueError, imageio.mvolsave, fname6, [np.zeros((90, 90, 90, 40))])
    raises(ValueError, imageio.mvolsave, fname6, [42])