Python get_five_prime_utr_length Examples

Example #1

File: test_ensembl.py Project: xflicsu/immuno

def test_get_5prime_utr_length_CTNNB1():

    transcript_id = "ENST00000405570"
    exons = ensembl.get_exons_from_transcript(transcript_id)

    utr_length = ensembl.get_five_prime_utr_length(exons)
    print utr_length
    assert(utr_length == 156)

Example #2

File: test_ensembl.py Project: xflicsu/immuno

def test_get_5prime_utr_length_reverse_strand_CASP9():

    transcript_id = "ENST00000333868"
    exons = ensembl.get_exons_from_transcript(transcript_id)

    utr_length = ensembl.get_five_prime_utr_length(exons, forward = False)
    print utr_length
    assert(utr_length == 95)

Example #3

File: test_ensembl.py Project: xflicsu/immuno

def test_get_5prime_utr_length_RET():

    transcript_id = "ENST00000355710"
    exons = ensembl.get_exons_from_transcript(transcript_id)

    utr_length = ensembl.get_five_prime_utr_length(exons)
    print utr_length
    assert(utr_length == 232)