Python GraphAssembler.save_dot Examples

Example #1

def draw_graph(stmts, fname):
    graphpr = {'rankdir': 'TD'}
    nodepr = {'fontsize': 12, 'shape': 'plaintext', 'margin': '0,0', 'pad': 0}
    ga = GraphAssembler(stmts, graph_properties=graphpr,
                        node_properties=nodepr)
    ga.make_model()
    ga.save_dot('%s.dot' % fname)
    ga.save_pdf('%s.pdf' % fname)

Example #2

File: test_graph_assembler.py Project: vishalbelsare/indra-1

def test_save_dot():
    st = [Phosphorylation(Agent('MAP2K1'), Agent('MAPK1'))]
    ga = GraphAssembler()
    ga.add_statements(st)
    ga.make_model()
    ga.save_dot('/dev/null')

Example #3

File: test_graph_assembler.py Project: johnbachman/indra

def test_save_dot():
    st = [Phosphorylation(Agent('MAP2K1'), Agent('MAPK1'))]
    ga = GraphAssembler()
    ga.add_statements(st)
    ga.make_model()
    ga.save_dot('/dev/null')