def setup(self, bottom, top):
params = yaml.load(self.param_str)
self.check_params(params)
caffe_root = params['caffe_root']
db_dir = params['db_dir']
self.group_cnt = params['group_cnt']
self.batch_size = params['batch_size']
lmdb_db_path_q, lmdb_db_path_t, meta_db_path_q, meta_db_path_t = self.define_db_paths(
db_dir)
self.im_shape = params['im_shape']
self.q_loader = loader.Loader(lmdb_db_path_q, meta_db_path_q,
caffe_root, self.im_shape[1])
self.t_loader = loader.Loader(lmdb_db_path_t, meta_db_path_t,
caffe_root, self.im_shape[1])
self.load_from_q_base = True
self.is_finished = False
self.group_id = 0
self.item_id = 0
#data
top[0].reshape(self.batch_size, self.im_shape[0], self.im_shape[1],
self.im_shape[2])
#labels
top[1].reshape(self.batch_size)
#group
top[2].reshape(1)
#database (query or test)
top[3].reshape(1)
def create_dataset(cfg, image_data):
if image_data:
imgs = image_to_array(image_data)
imgs_str = image_to_string(image_data)
masks = []
names = image_data
else:
files_csv = dataset_to_path(cfg.test_data,
os.path.join(cfg.data_dir, 'test'), cfg.dim)
imgs_str = []
for file_csv in files_csv:
df = pd.read_csv(file_csv, header=None)
img_paths = df[0]
imgs_str.extend(image_to_string(img_paths))
l = loader.Loader(cfg)
imgs, masks, names = l.create_eval_data(dataset_to_path(cfg.test_data,
os.path.join(cfg.data_dir, 'test'), cfg.dim))
dataset = namedtuple('data_collection', ['images', 'images_str' 'masks', 'names'])
dataset.images = imgs
dataset.images_str = imgs_str
dataset.masks = masks
dataset.names = names
return dataset
def __init__(self, master=None, logger=None):
super().__init__(master)
self.master = master
self.logger = logger
self.configure(bg=DARKCOLOR)
self.pack()
self.master.title("MAIA - Maine AI Arena")
# Create the msgr objs
self.msg_queue = queue.Queue()
self.imsgr = msgs.IMsgr(self.msg_queue)
self.omsgr = msgs.OMsgr(self.msg_queue)
self.ldr = loader.Loader(self.logger)
self.sim = sim.Sim(self.imsgr)
# log.LogInit()
# log_setting = self.ldr.getMainConfigData('debug')
# if type(log_setting)==bool:
# log.LogSetDebug(log_setting)
# log.LogDebug("DEBUG IS ON")
self.combat_log = []
self.BuildUI()
self.UIMap = None
def main():
parser = argparse.ArgumentParser(description='Generate sample tree data under the protracted speciation model')
parser.add_argument('--output', '-o')
parser.add_argument('--schema', '-s', choices=['newick', 'nexus'], required=True,
help='Tree schema: Newick, Nexus')
parser.add_argument('--config', '-c', default="default", required=True, help='')
args = parser.parse_args()
args.parser = parser
config = cl.Loader(args.output)
headers = config.load_headers()
# load run parameters
generated_sample_parameters = config.get_generate_sample_values()
generated_protracted_speciation_process_parameters = config.generate_protracted_speciation_process_values()
try:
# getting trees
get_trees = call_sample_tree(generated_sample_parameters, generated_protracted_speciation_process_parameters)
# generating Sequences & saving trees, creating file names
a = rng_file_name()
for i in range(len(get_trees)):
names = ["lineage", "orthospecies"]
file_name = names[i][:3] + '_' + a + "." + str(args.schema)
file_output(get_trees[i], args, file_name)
parameters_to_json(generated_sample_parameters, generated_protracted_speciation_process_parameters, headers,
file_name)
except:
pass
def main(argv=None):
parser = argparse.ArgumentParser(description="Training driver")
parser.add_argument("-v", "--verbose", default=False, action="store_true")
parser.add_argument("-c", "--config_file", default="config.json")
parsed_arguments = parser.parse_args()
arguments = vars(parsed_arguments)
is_verbose = arguments['verbose']
config_file = arguments['config_file']
if is_verbose:
logging.basicConfig(level=logging.DEBUG)
else:
logging.basicConfig(level=logging.INFO)
with open(config_file) as fid:
config = json.load(fid)
initialize_defaults(config)
data_dir = config.get("data_dir")
output_path = config.get("output_path")
ldr = loader.Loader(data_dir, config)
model = Model(is_verbose)
if tf.gfile.Exists(output_path):
tf.gfile.DeleteRecursively(output_path)
tf.gfile.MakeDirs(output_path)
run_training(model, ldr, config)
def __init__(self, size_x, size_y, yaml, max_e=1000, fps=20):
self.x = size_x
self.y = size_y
self.max_entities = max_e
self.entities = []
self.fps = fps
self.loader = loader.Loader(yaml)
def __init__(self):
self.score = 0
self.loader = loader.Loader()
self.gamemode = fsm([('Playing', 'GameOver', lambda x: x == 'GameOver'),
('MainMenu', 'Playing', lambda x: x == 'NewGame', lambda x, y: self.newgame()),
('MainMenu', 'Playing', lambda x: x == 'Resume'),
('Playing', 'MainMenu', lambda x: x == 'MainMenu'),
('GameOver', 'Playing', lambda x: x == 'GameOver')])
self.gamemode.start('MainMenu')
self.menu = kezmenu.KezMenu(['SPACE ACE!', lambda: True],
['New Game', lambda: self.gamemode.event('NewGame')],
['Exit', lambda: pygame.event.post(pygame.event.Event(pygame.QUIT))])
self.menu.center = True # enable horizontal menu item centering
self.menu.color = WHITE
self.menu.focus_color = GREEN
self.menu.options[0]['focus_color'] = RED
self.menu.options[0]['color'] = RED
self.menu.options[0]['font'] = pygame.font.Font("fonts/OverdriveInline.ttf", 75)
self.menu._fixSize()
self.menu.center_at(SCREEN_CENTER) # center entire menu to screen
self.enemy_list = pygame.sprite.Group()
self.player_list = pygame.sprite.Group()
self.all_sprites_list = pygame.sprite.Group()
self.events = None
# Create the player
self.player = sprites.Player(self.loader.PLAYER_IMAGE)
self.all_sprites_list.add(self.player)
self.player_list.add(self.player)
def main():
parser = argparse.ArgumentParser(
description=
'Generate sample tree data under the protracted speciation model')
parser.add_argument('--t',
metavar='N',
nargs='+',
help='Incoming tree parameter')
parser.add_argument('--s',
metavar='N',
nargs='+',
help='Incoming tree parameter')
parser.add_argument('--output')
args = parser.parse_args()
args.parser = parser
config = cl.Loader(args.output)
headers = config.load_headers()
for i in args.s:
file = i[:-14] + '_t_params.json'
with open(file, 'r') as f:
d = json.load(f)
with open(i, 'r') as r:
d2 = json.load(r)
d.update(d2)
dtc.write_params_to_txt(d, headers)
def main():
import os
import time
import tempoclock
import loader
import server
ctl = server.connect(spew=True)
ctl.sendMsg('/dumpOSC', 1)
SYNTHDEF_PATH = os.path.join(os.path.expanduser('~'), '.pksampler',
'synthdefs')
SYNTHDEFS = (
'JASStereoSamplePlayer.scsyndef',
'JASSine.scsyndef',
)
for fname in SYNTHDEFS:
ctl.sendMsg('/d_load', os.path.join(SYNTHDEF_PATH, fname))
player = Player(ctl)
ldr = loader.Loader(ctl)
bid = ldr.load('/Users/patrick/.pksampler/clicks/click_1.wav')
clock = tempoclock.TempoClock(140.0)
beats = [clock.spb() * i for i in range(100)]
now = time.time() + 1
freqs = [440, 550, 220, 200, 460]
synth = Synth()
synth.name = 'JASSine'
for seconds in beats:
abs = now + seconds
freqs = freqs[1:] + freqs[:1]
synth['freq'] = freqs[0]
player.play(synth, abs, abs + 1)
def __init__(self):
load = loader.Loader("TETRIS")
load.read()
memory = mmu.MMU(load.data)
processor = cpu.CPU(memory)
display = video.Video()
display.mainloop(processor.step)
def load_tests():
'''
Create a TestLoader and load tests for the directory given by the config.
'''
testloader = loader_mod.Loader()
log.test_log.message(terminal.separator())
log.test_log.message('Loading Tests', bold=True)
testloader.load_root(config.config.directory)
return testloader
def setup(self):
self.usage = [
'usage:', 'start process_name [waittime]',
'stop process_name stop_dep?', 'status process_name collect_dep?',
'restart process_name restart_dep?', 'ls [user]'
]
self.usage = '\n '.join(self.usage)
super(LauncherServer, self).setup()
self.loader = loader.Loader(self.server.dconn)
self.load()
def __init__(self, cfg, info):
self.cfg = cfg
self.info = info
# set seed before calling loader ?
tf.set_random_seed(cfg.seed)
self.dataloader = loader.Loader(cfg)
self.model = model.Model(cfg)
self.update_csv_path()
self.make_paths()
self.make_dirs()
self.n_train, self.n_val, self.n_test = self.get_data_info()
def setup(self, bottom, top):
# params is a python dictionary with layer parameters.
params = yaml.load(self.param_str)
# Check the paramameters for validity.
self.check_params(params)
db_dir = params['db_dir']
lmdb_db_path_q, lmdb_db_path_t, meta_db_path_q, meta_db_path_t = self.define_db_names(
db_dir)
self.max_query_size = params['max_query_size']
self.im_shape = params['im_shape']
self.pos_test_num = params['pos_test_num']
self.neg_test_num = params['neg_test_num']
caffe_root = params['caffe_root']
self.group_cnt = params['group_cnt']
self.filterQFile = ''
if (os.path.exists(db_dir + '/dup')):
self.filterQFile = db_dir + '/dup'
self.q_loader = loader.Loader(lmdb_db_path_q,
meta_db_path_q,
caffe_root,
self.im_shape[1],
filterQFile=self.filterQFile)
self.q_loader.set_group_cnt(self.group_cnt)
self.t_loader = loader.Loader(lmdb_db_path_t, meta_db_path_t,
caffe_root, self.im_shape[1])
self.t_loader.set_group_cnt(self.group_cnt)
self.batch_size = self.pos_test_num + self.neg_test_num + self.max_query_size
#data
top[0].reshape(self.batch_size, self.im_shape[0], self.im_shape[1],
self.im_shape[2])
#label
top[1].reshape(self.batch_size)
#current group id
top[2].reshape(1)
def loadText(self, e):
dlg = wx.FileDialog(self,
"Wybierz plik do otwarcia",
"",
"*.*",
style=wx.FD_OPEN)
if dlg.ShowModal() == wx.ID_OK:
self.textFile = dlg.GetFilename()
dir = dlg.GetDirectory()
self.sub = loader.Loader(os.path.join(dir, self.textFile))
dlg.Destroy()
self.text = self.sub.getText()
def setUp(self):
self.repo = rubiks_repository.RubiksRepository()
modules = [x.get_module_path() for x in self.repo.get_modules()]
kube_loader.load(*modules)
self.collection = output.OutputCollection(loader.Loader(self.repo), self.repo)
self.collection.confidential = output.ConfidentialOutput
self.collection.written = []
self.collection.clusterless['testns'] = {'namespace-testns': FakeOutputMember(self.collection, 'namespace-testns')}
self.collection.clusterless['testns']['namespace-testns'].kobj = kube_objs.Namespace('testns')
self.collection.clusterless['testns']['namespace-testns'].is_namespace = True
self.collection.clusterless['testns']['namespace-testns'].cluster = None
def __init__(self, dataDir):
"""init the internal instances of stuff"""
self.dataDir = dataDir
self.logger = logging.getLogger("util")
self.logger.debug("Data dir is: " + dataDir)
self.problemSet = loader.Loader(dataDir).problemsDictionary
self.evaluator = CodeRunner.Evaluate(dataDir)
self.langs = self.evaluator.getLangs()
self.logger.info("Supporting the following languages: " +
str(self.langs))
self.passwd = json.load(open(os.path.join(dataDir, "passwd.json")))
self.scoreboard = scoring.ScoreBoard(dataDir)
def run_test(distance, angle, start, end, plot_):
if angle < 10:
angle_str = "0" + str(int(angle))
else:
angle_str = str(int(angle))
if distance < 10:
distance_str = "0" + str(int(distance))
else:
distance_str = str(int(distance))
stri = "A2_CH_" + angle_str + '_' + distance_str
loaded = loader.Loader("../measurements/measurement_1/", stri)
signals = loaded.get_measurements()
# cut them to the beginning of a signal
if end < 0:
end = len(signals[0])
for i in range(0, len(signals)):
signals[i] = signals[i][start:end]
#also plot them
if plot_:
plt.figure()
x = range(0, len(signals[0]))
for i in range(0, len(signals)):
plt.subplot(8, 1, i + 1)
plt.plot(x, signals[i])
plt.show()
#main calculation
array = GeometryLibrary.calculateMicrophoneArray_2(
0.35, GeometryLibrary.getPoint(0, 0))
source_pos = GeometryLibrary.getPoint(0, distance)
distances = [] #TODO calculate them
for i in range(0, len(signals)):
distances.append(GeometryLibrary.distance(source_pos, array[i]))
#print(distances[i])
speed_of_sound = 343.3
sample_rate = loaded.get_meta_data()["sampling_rate"]
calib = calibrator.Calibrator(signals, distances, speed_of_sound,
sample_rate)
ks = calib.run_calibration()
print(ks)
def __init__(self, num_p, num_q, k_ability, k_difficulty, num_classes):
"""
Create blocks and initialize members
"""
self.loader = loader.Loader()
self.num_classes = num_classes
self.num_participants = num_p
self.num_questions = num_q
self.k_ability = k_ability
self.k_difficulty = k_difficulty
self.feature = feature.FeatureRepresenter(self.num_participants,
self.num_questions,
k_ability, k_difficulty, 2)
self.block1 = block1.Block1(k_ability + k_difficulty + 2)
self.block2 = block2.Block2(self.num_participants, self.num_classes)
def setup(self, bottom, top):
params = yaml.load(self.param_str)
self.check_params(params)
caffe_root = params['caffe_root']
db_dir = params['db_dir']
self.group_cnt = params['group_cnt']
self.batch_size = params['batch_size']
self.set_triplet_size = params['set_triplet_size']
self.im_shape = params['im_shape']
lmdb_db_path = db_dir + '/' + 'test_all'
meta_db_path = db_dir + '/' + 'meta_test_all'
self.loader = loader.Loader(lmdb_db_path, meta_db_path, caffe_root,
self.im_shape[1])
self.group_id = 0
def do_rerun():
# Init early parts of log
with RunLogHandler() as log_handler:
# Load previous results
results = result.InternalSavedResults.load(
os.path.join(config.config.result_path,
config.constants.pickle_filename))
rerun_suites = (suite.uid for suite in results if suite.unsucessful)
# Use loader to load suites
loader = loader_mod.Loader()
test_schedule = loader.load_schedule_for_suites(*rerun_suites)
# Execute the tests
run_schedule(test_schedule, log_handler)
def load_model(model_path, is_verbose, batch_size):
# TODO, (awni), would be good to simplify loading and
# not rely on random seed for validation set.
config_file = os.path.join(model_path, "config.json")
with open(config_file, 'r') as fid:
config = json.load(fid)
data_conf = config['data']
ldr = loader.Loader(data_conf['path'], batch_size, seed=data_conf['seed'])
evl = evaler.Evaler(model_path,
is_verbose,
batch_size=batch_size,
class_counts=None)
return evl, ldr
def make_train_dataset():
global vals
__loader = loader.Loader()
__loader.load()
vals = __loader.to_percentage_from_start()
#vals = __loader.to_percentage_from_last()
# 正規化(n_samples, n_features)
#scaler = MinMaxScaler(feature_range=(0, 1))
#vals = scaler.fit_transform(vals)
__loader.save_data()
df = pd.DataFrame(vals)
df.plot(figsize=(15, 5)).get_figure().savefig("graph_orig.png")
def setup(self, bottom, top):
params = yaml.load(self.param_str)
self.check_params(params)
caffe_root = params['caffe_root']
db_dir = params['db_dir']
self.group_cnt = params['group_cnt']
self.class_num = params['class_num']
self.train_per_class = params['train_per_class']
self.test_per_class = params['test_per_class']
self.batch_len = params['batch_len']
self.im_shape = params['im_shape']
lmdb_db_path = db_dir + '/' + 'test_all'
meta_db_path = db_dir + '/' + 'meta_test_all'
self.loader = loader.Loader(lmdb_db_path, meta_db_path, caffe_root,
self.im_shape[1])
self.group_size = self.class_num * self.train_per_class + self.class_num * self.test_per_class
def set_up(self, window_width_and_height):
self.__core = core.Core(self.core_size)
self.gui = window.GUI(window_width_and_height, self.__core)
self.__core.set_gui_callback(self.gui)
main_loader = loader.Loader(self.__core)
# load instructions
first_warior = warior.Warior("first_warior", "#ff0000") # todo index
first_warior.set_gui_callback(self.gui)
self.__core.add_warior(first_warior)
start_index = main_loader.load_file_at(first_warior, "dwarf.txt", 0,
self.core_size)
first_warior.add_process(start_index)
second_warior = warior.Warior("second_warior", "#00ff00")
second_warior.set_gui_callback(self.gui)
self.__core.add_warior(second_warior)
start_index = main_loader.load_file_at(second_warior, "agony3.1.txt",
100, self.core_size)
second_warior.add_process(start_index)
def do_run():
# Initialize early parts of the log.
with RunLogHandler() as log_handler:
if config.config.uid:
uid_ = uid.UID.from_uid(config.config.uid)
if isinstance(uid_, uid.TestUID):
log.test_log.error(
'Unable to run a standalone test.\n'
'Gem5 expects test suites to be the smallest unit '
' of test.\n\n'
'Pass a SuiteUID instead.')
return
test_schedule = loader_mod.Loader().load_schedule_for_suites(uid_)
if get_config_tags():
log.test_log.warn(
"The '--uid' flag was supplied,"
" '--include-tags' and '--exclude-tags' will be ignored.")
else:
test_schedule = load_tests().schedule
# Filter tests based on tags
filter_with_config_tags(test_schedule)
# Execute the tests
run_schedule(test_schedule, log_handler)
def get_command_line_input(self, argv):
'''Parse the command line input that specifies data file paths.'''
data_file_path = ""
try:
opts, _ = getopt.getopt(argv, "", ["path=", "start=", "stop="])
except getopt.GetoptError:
print(
"article_analytics.py --path <pattern_of_path_to_data_files> --start \
<start_of_file_index_range> --end <end_of_file_index_range>")
sys.exit(2)
for option, value in opts:
if option == "--path":
data_file_path = value
elif option == "--start":
self.range_start = int(value)
else:
self.range_end = int(value)
data_loader = loader.Loader()
_, file_extension = os.path.splitext(data_file_path)
if file_extension == ".json":
data_loader.load_json(data_file_path, self.range_start,
self.range_end)
self.df = data_loader.get_data()
elif file_extension == ".csv":
data_loader.load_csv(data_file_path, self.range_start,
self.range_end)
self.df = data_loader.get_data()
else:
print(
"Unrecognizable data file format. Data file must be in .csv or .json format!"
)
sys.exit()
def setup(self, bottom, top):
params = yaml.load(self.param_str)
self.check_params(params)
caffe_root = params['caffe_root']
db_dir = params['db_dir']
self.group_cnt = params['group_cnt']
self.batch_size = params['batch_size']
self.set_triplet_size = params['set_triplet_size']
self.im_shape = params['im_shape']
for key in params:
print '|' + key + '|'
if ('train_set_size' in params):
self.train_set_size = params['train_set_size']
self.test_set_size = params['test_set_size']
self.test_pos_size = params['test_pos_size']
self.test_neg_size = self.test_set_size - self.test_pos_size
else:
self.train_set_size = -1
self.test_set_size = -1
self.test_pos_size = -1
self.test_neg_size = -1
if ('meta_mode' in params):
self.meta_mode = True
print 'META MODE ENABLED'
else:
self.meta_mode = False
print 'META MODE DISABLED'
lmdb_db_path = db_dir + '/' + 'test_all'
meta_db_path = db_dir + '/' + 'meta_test_all'
self.loader = loader.Loader(lmdb_db_path, meta_db_path, caffe_root,
self.im_shape[1])
self.update_group_ids()
self.group_id = 0
def main():
parser = argparse.ArgumentParser(
description=
'Generate sample tree data under the protracted speciation model')
parser.add_argument('--ts', metavar='N', nargs='+', help='Incoming trees')
parser.add_argument('--output_dir')
parser.add_argument('--params',
metavar='N',
nargs='+',
help='Incoming parameter files')
args = parser.parse_args()
args.parser = parser
config = cl.Loader(args.output_dir)
# get seqgen parameters
get_seqgen_param = config.get_seq_gen_values()
# write seqgen params to file
for i in range(len(args.ts)):
id = args.ts[i].split('.')[0]
seqgen_params_with_id = {'id': id, **get_seqgen_param}
parameters_to_json(id, seqgen_params_with_id)
# generate seqs
seqgen_to_file(args.ts, get_seqgen_param)
def main_screen(self):
self.screen = Tk()
self.code_loader = loader.Loader(password)
self.entry_test = autocomplete.AutocompleteEntryBox(lista, self.screen)
self.screen.geometry("600x500+100+100")
self.screen.title("LoaderGui")
Label(text="LoaderGui V0.01",
bg="grey",
width="300",
height="2",
font=("Calibri", 13)).pack()
Label(text="").pack()
Label(self.screen, text="Uni ID").pack()
self.entry_test.pack()
Label(text="").pack()
Button(text="Upload code",
height="1",
width="30",
command=self.load_screen).pack()
Label(text="").pack()
Button(text="Stop robot", height="1", width="30",
command=self.stop).pack()
Label(text="").pack()
Button(text="Fetch output",
height="1",
width="30",
command=self.load_screen).pack()
Label(text="").pack()
self.screen.mainloop()
