Python GeneDetector.parse_blast_hits Examples

Example #1

File: test_GeneDetector.py Project: jacquikeane/madansi

 def test_parse_blast_fits_empty_file(self):
     """Parses empty file correctly"""
     gene_detector = GeneDetector('madansi/tests/data/empty_file.fa',
                                  'madansi/tests/data/empty_file')
     self.assertEqual(gene_detector.parse_blast_hits(), [])

Example #2

File: test_GeneDetector.py Project: JTumelty/madansi

 def test_parse_blast_fits_empty_file(self):
     """Parses empty file correctly"""
     gene_detector= GeneDetector('madansi/tests/data/empty_file.fa', 'madansi/tests/data/empty_file')
     self.assertEqual(gene_detector.parse_blast_hits(), [])

Example #3

File: test_GeneDetector.py Project: jacquikeane/madansi

 def test_parse_blast_hits_one(self):
     """Tests that the correct type of object is obtained from parsing one blast hit"""
     gene_detector = GeneDetector('madansi/tests/data/assembly.fa',
                                  'madansi/tests/data/one_blast_hit')
     self.assertTrue(
         isinstance(gene_detector.parse_blast_hits()[0], BlastHit))

Example #4

File: test_GeneDetector.py Project: JTumelty/madansi

 def test_parse_blast_hits_one(self):
     """Tests that the correct type of object is obtained from parsing one blast hit"""
     gene_detector = GeneDetector('madansi/tests/data/assembly.fa', 'madansi/tests/data/one_blast_hit')
     self.assertTrue(isinstance(gene_detector.parse_blast_hits()[0], BlastHit))