# -*- coding: utf-8 -*-
"""
Created on Mon Apr 13 10:21:53 2015
@author: Tristan Giesa, David I. Spivak, Ravi Jagadeesan
"""
import matriarch
mySeq = 'AAAPPY'
myChain = matriarch.chain(mySeq)
def T(x):
return[-x[2], x[1],x[0]-25]
def TPrime(x):
return[-x[2],x[1],x[0]]
g = [T,TPrime]
movedChain = matriarch.moveOrbs(myChain,g)
movedChain.fileOut('04-movedChain.pdb')
# -*- coding: utf-8 -*-
"""
Created on Mon Apr 13 10:21:53 2015
@author: Tristan Giesa, David I. Spivak, Ravi Jagadeesan
"""
import matriarch
mySeq = 'AAAPPY'
myChain = matriarch.chain(mySeq)
def F(x):
return [-x[2], x[1], x[0] - 25]
def FPrime(x):
return [-x[2], x[1], x[0]]
g = [F, FPrime]
myChain_newAxis = matriarch.moveOrbs(myChain, g)
def parabola(t):
return [-t * t, 0, 10 * t]
Rout = matriarch.Ray([18, 0, 0], [0, 0, 0])
W = matriarch.buildAxisTwister(parabola, Rout)
warpedBlock = matriarch.twist(myChain_newAxis, W)
matriarch.fileOut(warpedBlock, '06-warpedBlock.pdb')
# -*- coding: utf-8 -*-
"""
Created on Mon Apr 13 10:21:53 2015
@author: Tristan Giesa, David I. Spivak, Ravi Jagadeesan
"""
import matriarch
mySeq = 'AAAPPY'
myChain = matriarch.chain(mySeq)
def F(x):
return [-x[2], x[1], x[0]-25]
def FPrime(x):
return [-x[2], x[1], x[0]]
g = [F, FPrime]
myChain_newAxis = matriarch.moveOrbs(myChain, g)
def parabola(t):
return [-t*t, 0, 10*t]
Rout = matriarch.Ray([18,0,0],[0,0,0])
W = matriarch.buildAxisTwister(parabola,Rout)
warpedBlock = matriarch.twist(myChain_newAxis, W)
matriarch.fileOut(warpedBlock,'06-warpedBlock.pdb')