def test_gimap4_reverse(self): gimap4 = EXAMPLE_GENES['GIMAP4'] gimap4_seq = reverse_complement(gimap4.seq) donors = predict_splice_sites(gimap4_seq, True) for d in donors: assert gimap4_seq[d.start - 1:d.end] == d.seq assert len(donors) == 5
def test_gimap4_reverse(self): gimap4 = EXAMPLE_GENES['GIMAP4'] gimap4_seq = reverse_complement(gimap4.seq) donors = predict_splice_sites(gimap4_seq, True) for d in donors: self.assertEqual(d.seq, gimap4_seq[d.start - 1:d.end]) self.assertEqual(5, len(donors))
def test_gimap4(self): gimap4 = EXAMPLE_GENES['GIMAP4'] donors = predict_splice_sites(gimap4.seq) for d in donors: print(d) assert len(donors) == 5