Python predict_splice_sites示例

示例#1

 def test_gimap4_reverse(self):
     gimap4 = EXAMPLE_GENES['GIMAP4']
     gimap4_seq = reverse_complement(gimap4.seq)
     donors = predict_splice_sites(gimap4_seq, True)
     for d in donors:
         assert gimap4_seq[d.start - 1:d.end] == d.seq
     assert len(donors) == 5

示例#2

文件： test_splicing.py 项目： stevetsa/mavis

 def test_gimap4_reverse(self):
     gimap4 = EXAMPLE_GENES['GIMAP4']
     gimap4_seq = reverse_complement(gimap4.seq)
     donors = predict_splice_sites(gimap4_seq, True)
     for d in donors:
         self.assertEqual(d.seq, gimap4_seq[d.start - 1:d.end])
     self.assertEqual(5, len(donors))

示例#3

 def test_gimap4(self):
     gimap4 = EXAMPLE_GENES['GIMAP4']
     donors = predict_splice_sites(gimap4.seq)
     for d in donors:
         print(d)
     assert len(donors) == 5