def body(self, guiFrame):
guiFrame.grid_rowconfigure(0, weight=1)
guiFrame.grid_columnconfigure(1, weight=1)
row = 0
if self.message:
label = Label(guiFrame,
text=self.message,
gridSpan=(1, 2),
grid=(row, 0))
row += 1
if self.label:
label = Label(guiFrame, text=self.label, grid=(row, 0))
self.itemMenu = PulldownList(guiFrame,
texts=self.entries,
objects=self.entries,
index=self.default,
grid=(row, 1))
row += 1
texts = [self.select_text, 'Cancel']
commands = [self.ok, self.cancel]
buttons = ButtonList(guiFrame,
texts=texts,
commands=commands,
gridSpan=(1, 2),
grid=(row, 0))
def __init__(self,
guiParent,
basePopup,
borderRelief='raised',
text=' ',
justify='left',
width=None,
font=None,
height=None,
*args,
**kw):
# Base popup required to handle notification of data model changes
# e.g. new peak lists, so that the GUI can update to the latest
# state
self.basePopup = basePopup
self.guiParent = guiParent
self.borderRelief = borderRelief
self.text = text
self.justify = justify
self.width = width
self.font = font
self.height = height
self.registerNotify = basePopup.registerNotify
self.unregisterNotify = basePopup.unregisterNotify
LabelFrame.__init__(self, guiParent, borderRelief, text, justify,
width, font, height, *args, **kw)
# set up the grid
self.grid_columnconfigure(0, weight=0, minsize=20)
self.grid_rowconfigure(0, weight=0, minsize=5)
self.grid_rowconfigure(1, weight=0, minsize=10)
self.grid_rowconfigure(2, weight=0, minsize=10)
self.grid_rowconfigure(3, weight=0, minsize=10)
# build up the body.
self.nameLabel = Label(self, text='Exp Type:')
self.nameLabel.grid(row=1, column=0, padx=2, sticky='nw')
self.nameText = Text(self, width=15, height=1)
self.nameText.grid(row=1, column=1, sticky='nw')
self.clearButton = Button(self,
text='Clear',
command=self.clear_filter,
width=7,
height=1)
self.clearButton.grid(row=2, column=0, columnspan=2, sticky='nw')
self.filterButton = Button(self,
text='Go',
command=self.tmpCall,
width=7,
height=1)
self.filterButton.grid(row=2, column=1, columnspan=2, sticky='ne')
def body(self, guiFrame):
ProgressBar.body(self, guiFrame)
guiFrame.expandGrid(2,3)
self.stepLabel = Label(guiFrame, text='Best step: ', grid=(0,3))
frame = LabelFrame(guiFrame, text='Best mappings', grid=(1,0), gridSpan=(1,4))
row = 0
for i in range(self.ensembleSize):
label = Label(frame, text='', pady=0, font='Courier 10',
borderwidth=0, grid=(row,0), sticky='ew')
self.labels.append(label)
row +=1
guiFrame.grid_rowconfigure(2, weight=1)
self.graph = ScrolledGraph(guiFrame, width=450, height=300,
graphType='scatter', title='Typing Scores',
xLabel='Spin System', yLabel='Score',
grid=(2,0), gridSpan=(1,4))
self.buttonList = ButtonList(guiFrame, texts=['Close',], commands=[self.done],
grid=(3,0), gridSpan=(1,4))
self.buttonList.buttons[0].disable()
def body(self, master):
master.grid_columnconfigure(1, weight=1)
row = 0
label = Label(master, text='Axis unit name: ', grid=(row, 0))
tipText = 'Short textual name for the unit, e.g. "KPa" or "ms"'
self.nameEntry = Entry(master,
width=10,
grid=(row, 1),
tipText=tipText)
row += 1
label = Label(master, text='Unit is backwards: ', grid=(row, 0))
tipText = 'Whether the axis values decrease left to right & bottom to top. For example "ppm" does, but most units do not'
self.backwardsMenu = BooleanPulldownMenu(master,
grid=(row, 1),
tipText=tipText)
row += 1
tipTexts = [
'Make a new unit specification using the stated options and close this popup'
]
texts = ['Create']
commands = [self.ok]
buttons = UtilityButtonList(master,
texts=texts,
commands=commands,
closeText='Cancel',
helpUrl=self.help_url,
grid=(row, 0),
gridSpan=(1, 2),
tipTexts=tipTexts)
master.grid_rowconfigure(row, weight=1)
def body(self, parent):
self.bw = 2 # borderwidth
width = self.cWidth + self.bw
height = self.cHeight + self.bw
self.label = Label(parent, text=self.text)
self.label.grid(row=0, column=0, sticky=Tkinter.W)
self.percent = Label(parent, text=' %')
self.percent.grid(row=0, column=2, sticky=Tkinter.W)
self.canvas = Canvas(parent,
background='grey70',
width=width,
height=height)
self.canvas.grid(row=0, column=1, sticky=Tkinter.W)
self.canvas.create_rectangle(0,
0,
width,
height,
outline='black',
width=self.bw)
self.bar = self.canvas.create_rectangle(self.bw,
self.bw,
self.bw,
self.cHeight,
outline='#B05848',
fill='#B05848',
width=self.bw)
self.update()
def __init__(self,
parent,
label,
entry='',
separator=': ',
label_width=20,
entry_width=60,
label_anchor=Tkinter.E,
show='',
isArray=False,
returnCallback=None,
*args,
**kw):
apply(Frame.__init__, (self, parent) + args, kw)
self.grid_columnconfigure(1, weight=1)
self.separator = separator
text = label + separator
self.label = Label(self,
text=text,
width=label_width,
anchor=label_anchor)
self.label.grid(row=0, column=0, sticky=Tkinter.EW)
self.entry = FloatEntry(self,
show=show,
width=entry_width,
isArray=isArray,
returnCallback=returnCallback)
self.entry.grid(row=0, column=1, sticky=Tkinter.EW)
self.setEntry(entry)
def __init__(self, parent, values, initial_index = 0,
orient = Tkinter.HORIZONTAL, scale_length = 200,
label_width = 5, label_format = '%2.1f',
set_callback = None,
*args, **kw):
assert len(values) > 0
self.label_format = label_format
self.values = tuple(values)
self.set_callback = set_callback
apply(Frame.__init__, (self, parent) + args, kw)
if (orient == Tkinter.HORIZONTAL):
self.grid_columnconfigure(1, weight=1)
sticky = Tkinter.EW
row = 0
col = 1
else:
self.grid_rowconfigure(1, weight=1)
sticky = Tkinter.NS
row = 1
col = 0
self.label = Label(self, width=label_width)
self.label.grid(row=0, column=0, sticky=sticky)
self.scale = Tkinter.Scale(self, orient=orient, length=scale_length,
from_=0, to=len(values)-1, label='',
showvalue=0, command=self.setCallback)
self.scale.grid(row=row, column=col, sticky=sticky)
self.set(initial_index)
def __init__(self,
parent,
label1,
label2='',
separator=': ',
label1_width=20,
label2_width=60,
label1_anchor=Tkinter.E,
label2_anchor=Tkinter.W,
*args,
**kw):
apply(Frame.__init__, (self, parent) + args, kw)
self.grid_columnconfigure(1, weight=1)
self.separator = separator
text = label1 + self.separator
self.label1 = Label(self,
text=text,
width=label1_width,
anchor=label1_anchor)
self.label1.grid(row=0, column=0, sticky=Tkinter.EW)
text = label2
self.label2 = Label(self,
text=text,
width=label2_width,
anchor=label2_anchor)
self.label2.grid(row=0, column=1, sticky=Tkinter.EW)
def body(self, master):
self.geometry('600x500')
master.grid_rowconfigure(1, weight=1)
master.grid_columnconfigure(0, weight=1)
label = Label(master, text='Select Project Directory')
label.grid(row=0, column=0, sticky=Tkinter.W)
file_types = [FileType('Project', ['*.xml']), FileType('All', ['*'])]
self.file_select = FileSelect(master,
file_types=file_types,
show_file=False,
double_callback=self.ok,
getRowColor=self.getEntryColor,
getExtraCell=self.getProjectFileText,
extraHeadings=('Status', ),
extraJustifies=('left', ))
self.file_select.grid(row=1, column=0, sticky=Tkinter.NSEW)
texts = ['Open']
commands = [self.ok]
buttons = createDismissHelpButtonList(master,
texts=texts,
commands=commands,
dismiss_text='Cancel',
help_msg=self.help_msg,
help_url=self.help_url)
buttons.grid(row=2, column=0, sticky=Tkinter.EW)
self.ok_button = buttons.buttons[0]
def createKey(self, key):
attr = key[-1]
s = attr.name
if (len(key) > 1):
if (type(key[-2]) == type(0)):
role = key[-3]
n = key[-2]
t = '%s[%d]' % (role.otherClass.name, n)
else:
role = key[-2]
t = role.otherClass.name
else:
t = self.metaclass.name
title_label = Label(self.parent_frame)
class_label = Label(self.parent_frame, text=t, anchor=Tkinter.W)
name_label = Label(self.parent_frame,
text=s,
anchor=Tkinter.W,
bg=name_bg)
value_label = Label(self.parent_frame, anchor=Tkinter.W, bg=value_bg)
self.widget_dict[key] = (title_label, class_label, name_label,
value_label)
def updateDepositionImportLabel(self,
shiftList=None,
molecules=0,
chains=0,
models=0,
coordinates=0,
percentageLinked=None,
connectedChain=None):
if shiftList and shiftList not in self.importedShiftLists:
self.importedShiftLists.append(shiftList)
self.depositionImportNums[0] += 1
shifts = 0
for shiftList in self.importedShiftLists:
shifts += len(shiftList.measurements)
self.depositionImportNums[1] += shifts
self.depositionImportNums[2] += molecules
self.depositionImportNums[3] += chains
self.depositionImportNums[4] += models
self.depositionImportNums[5] += coordinates
if percentageLinked != None:
self.depositionImportNums[6] = percentageLinked
if connectedChain and connectedChain not in self.connectedChains:
self.depositionImportNums[7] += 1
self.connectedChains.append(connectedChain)
self.depositionImportLabel.destroy()
finalForeground = self.fontBadColor
if self.depositionImportNums[0] == 0 and self.depositionImportNums[
2] == 0:
# Nothing imported
foreground = self.fontBadColor
elif self.depositionImportNums[6]:
# Linked shifts available - TODO base this on % of shifts linked?
foreground = self.fontOkColor
if self.depositionImportNums[5]:
finalForeground = self.fontOkColor
else:
finalForeground = self.fontCheckColor
else:
# Intermediate state
foreground = self.fontCheckColor
self.depositionImportLabel = Label(self.frameD,
text=self.depositionImportText %
tuple(self.depositionImportNums),
foreground=foreground)
self.depositionImportLabel.grid(row=self.depositionImportLoc[0],
column=self.depositionImportLoc[1],
sticky='ew')
self.eciStart.configure(foreground=finalForeground)
def __init__(self, title, message, texts, objects=None, parent=None):
if parent is None:
parent = Tkinter.Tk()
#parent.withdraw()
self.root = parent
parent.protocol('WM_DELETE_WINDOW', self.destroy)
else:
self.root = None
Tkinter.Toplevel.__init__(self, parent)
self.resizable(0, 0)
self.parent = parent
self.title(title)
self.var = Tkinter.IntVar()
self.objects = objects or range(len(texts))
assert len(self.objects) == len(texts)
x = parent.winfo_rootx() + parent.winfo_width() / 2
y = parent.winfo_rooty() + parent.winfo_height() / 2
location = '+%d+%d' % (x, y)
if hasattr(parent, 'font'):
self.font = parent.font
else:
self.font = None
Tkinter.Toplevel.geometry(self, location)
Tkinter.Toplevel.lift(self, parent)
self.update_idletasks()
self.transient(parent)
self.protocol('WM_DELETE_WINDOW', self._null)
self.focus_force()
self.grab_set()
self.grid_rowconfigure(0, weight=1)
self.grid_columnconfigure(1, weight=1)
label = Label(self, text=message, grid=(0, 0))
self.config(bg=label.cget('bg'))
frame = Frame(self, grid=(1, 0))
_buttons = []
for i, text in enumerate(texts):
button = Button(frame,
text=text,
command=lambda j=i: self._click(j))
button.grid(row=i + 1, column=0, padx=2, pady=2, sticky='ew')
if objects[i] is None:
button.config(bg='#B0FFB0')
_buttons.append(button)
self._wait()
def body(self, guiFrame):
self.geometry('600x250+600+250')
analysisProfile = self.analysisProfile
userName = analysisProfile.userName
userOrganisation = analysisProfile.userOrganisation
userEmail = analysisProfile.userEmail
guiFrame.grid_rowconfigure(0, weight=1)
guiFrame.grid_columnconfigure(1, weight=1)
explainText = 'To keep track of our users and which versions are being used\n' \
'we would like you to register your details with us.\n' \
'Collating the number of users is important for grant applications.\n' \
'Please do not use accents in any of the information\n' \
'because Python does not handle it gracefully.'
row = 0
label = Label(guiFrame,
text=explainText,
grid=(row, 0),
gridSpan=(1, 2),
sticky='ew')
row += 1
licenseAgreeText = 'I agree to abide by the rules of the CCPN licensing agreement.'
self.agreeButton = CheckButton(guiFrame,
licenseAgreeText,
tipText=licenseAgreeText)
self.agreeButton.grid(row=row, column=1, columnspan=1, sticky='nsew')
row += 1
self.entryWidgets = []
for (text, value) in (('Name', userName),
('Organisation', userOrganisation), ('Email',
userEmail)):
label = Label(guiFrame, text=text + ':', grid=(row, 0))
entry = Entry(guiFrame,
text=value or '',
grid=(row, 1),
sticky='ew',
tipText='Your ' + text)
self.entryWidgets.append(entry)
row += 1
texts = ['Register Now', 'Read License', 'Register Later']
tipTexts = ['Register now', 'Read License', 'Register later']
commands = [self.register, self.openLicense, self.close]
buttons = UtilityButtonList(guiFrame,
helpUrl=self.help_url,
grid=(row, 0),
gridSpan=(1, 2),
commands=commands,
texts=texts,
tipTexts=tipTexts)
self.buttons = buttons
class LabeledFloatEntry(Frame):
def __init__(self,
parent,
label,
entry='',
separator=': ',
label_width=20,
entry_width=60,
label_anchor=Tkinter.E,
show='',
isArray=False,
returnCallback=None,
*args,
**kw):
apply(Frame.__init__, (self, parent) + args, kw)
self.grid_columnconfigure(1, weight=1)
self.separator = separator
text = label + separator
self.label = Label(self,
text=text,
width=label_width,
anchor=label_anchor)
self.label.grid(row=0, column=0, sticky=Tkinter.EW)
self.entry = FloatEntry(self,
show=show,
width=entry_width,
isArray=isArray,
returnCallback=returnCallback)
self.entry.grid(row=0, column=1, sticky=Tkinter.EW)
self.setEntry(entry)
def getLabel(self):
text = self.label.get()
n = text.find(self.separator)
if (n >= 0):
text = text[:n]
return text
def setLabel(self, text=''):
text = text + self.separator
self.label.set(text)
def getEntry(self):
return self.entry.get()
def setEntry(self, value=''):
self.entry.set(value)
def body(self, guiParent):
self.geometry('320x120')
analysisProject = self.analysisProject
guiParent.expandGrid(5,3)
guiParent.expandGrid(5,4)
row = 0
div = LabelDivider(guiParent, text='Multi-dimensional Marks',
grid=(row,0), gridSpan=(1,4))
buttons = UtilityButtonList(guiParent, doClone=False, helpUrl=self.help_url)
buttons.grid(row=row, column=4, sticky='w')
row += 1
label = Label(guiParent, text='Maximum marks: ', grid=(row,0))
values = range(1, self.maxAllowedMarks+1)
entries = [ str(x) for x in values]
value = analysisProject.maxMarks
tipText = 'Sets the maximum number of multi-dimensional cross-marks that the user can add to spectrum window displays'
self.marks_menu = PulldownList(guiParent, callback=self.setMaxMarks, grid=(row,1),
texts=entries, objects=values,
index=value-1, tipText=tipText)
label = Label(guiParent, text=' Mark colour: ', grid=(row,2))
tipText = 'Sets the line colour of the multi-dimensional cross-marks, excepting those that go through peak centers'
self.marksSchemePulldown = PulldownList(guiParent, callback=self.setMarksColor,
grid=(row,3), tipText=tipText)
row += 1
label = Label(guiParent, text='(Non-peak marks only)', grid=(row,2), gridSpan=(1,2))
row += 1
div = LabelDivider(guiParent, text='1-dimensional Rulers',
grid=(row,0), gridSpan=(1,5))
row += 1
label = Label(guiParent, text='Maximum rulers: ', grid=(row,0))
values = range(1, self.maxAllowedRulers+1)
entries = [ str(x) for x in values]
value = analysisProject.maxRulers
tipText = 'Sets the maximum number of 1-dimensional ruler lines that the user can add to spectrum window displays'
self.rulers_menu = PulldownList(guiParent, callback=self.setMaxRulers, grid=(row,1),
texts=entries, objects=values, index=value-1, tipText=tipText)
label = Label(guiParent, text=' Ruler colour: ', grid=(row,2))
tipText = 'Sets the line colour of the 1-dimensional ruler lines'
self.rulersSchemePulldown = PulldownList(guiParent, callback=self.setRulersColor,
grid=(row,3), tipText=tipText)
self.updateSchemePulldowns()
def __init__(self, guiParent, basePopup):
# Base popup required to handle notification of data model changes
# e.g. new peak lists, so that the GUI can update to the latest
# state
self.basePopup = basePopup
self.guiParent = guiParent
self.registerNotify=basePopup.registerNotify
self.unregisterNotify=basePopup.unregisterNotify
Frame.__init__(self, guiParent)
# set up the grid
self.grid_columnconfigure(0, weight=1, minsize=10)
self.grid_columnconfigure(1, weight=0, minsize=10)
self.grid_columnconfigure(2, weight=0, minsize=20)
self.grid_columnconfigure(3, weight=1, minsize=10)
self.grid_rowconfigure(0, weight=1, minsize=5)
self.grid_rowconfigure(1, weight=0, minsize=10)
self.grid_rowconfigure(2, weight=0, minsize=10)
self.grid_rowconfigure(3, weight=0, minsize=10)
self.grid_rowconfigure(4, weight=1, minsize=5)
# build up the body.
# Column headers
self.user_label = Label(self,text='Username:'******'w')
self.user_value = Text(self, width=20, height=1, text="")
self.user_value.grid(row=1, column=2, padx=5, pady=5, sticky='w')
self.pswd_label = Label(self,text='Password:'******'w')
self.pswd_value = Text(self, width=20, height=1, text="")
self.pswd_value.grid(row=2, column=2, padx=5, pady=5, sticky='w')
self.cancel_button = Button(self, width=10, height=1,
text="Cancel",
command=self.quit )
self.cancel_button.grid(row=3, column=1, padx=5, pady=5, sticky='e')
self.login_botton = Button(self, width=10, height=1,
text="Login",
command=self.login )
self.login_botton.grid(row=3, column=2, padx=5, pady=5, sticky='w')
class LabeledLabel(Frame):
def __init__(self,
parent,
label1,
label2='',
separator=': ',
label1_width=20,
label2_width=60,
label1_anchor=Tkinter.E,
label2_anchor=Tkinter.W,
*args,
**kw):
apply(Frame.__init__, (self, parent) + args, kw)
self.grid_columnconfigure(1, weight=1)
self.separator = separator
text = label1 + self.separator
self.label1 = Label(self,
text=text,
width=label1_width,
anchor=label1_anchor)
self.label1.grid(row=0, column=0, sticky=Tkinter.EW)
text = label2
self.label2 = Label(self,
text=text,
width=label2_width,
anchor=label2_anchor)
self.label2.grid(row=0, column=1, sticky=Tkinter.EW)
def getLabel1(self):
text = self.label1.get()
n = text.find(self.separator)
if (n >= 0):
text = text[:n]
return text
def setLabel1(self, text):
text = text + self.separator
self.label1.set(text)
def getLabel2(self):
return self.label2.get()
def setLabel2(self, text):
self.label2.set(text)
def __init__(self,
parent,
label='',
world_region=None,
view_region=None,
orient=Tkinter.HORIZONTAL,
allow_resize=True,
width=20,
callback=None,
borderwidth=1,
show_text=True,
text_color='#000000',
text_decimals=2,
units_scroll=0.1,
pages_scroll=1.0,
menu_entries=None,
menu_callback=None,
min_thickness=None,
*args,
**kw):
self.menu_entries = menu_entries
self.myCallback = callback
Frame.__init__(self, parent, *args, **kw)
self.text_decimals = text_decimals
self.label = Label(self, text=label, width=4)
self.menu = PulldownMenu(self,
callback=menu_callback,
entries=menu_entries)
self.entry = FloatEntry(self,
width=6,
returnCallback=self.adjustScrollbar)
self.region_scrollbar = RegionScrollbar(self,
world_region=world_region,
view_region=view_region,
orient=orient,
allow_resize=allow_resize,
width=width,
callback=self.doCallback,
borderwidth=borderwidth,
show_text=show_text,
text_color=text_color,
text_decimals=text_decimals,
units_scroll=units_scroll,
pages_scroll=pages_scroll,
min_thickness=min_thickness)
self.gridAll()
def __init__(self,
parent,
width=70,
height=20,
xscroll=False,
yscroll=True,
*args,
**kw):
apply(Frame.__init__, (self, parent) + args, kw)
self.grid_columnconfigure(1, weight=1)
row = 0
texts = ('back', 'forward', 'load')
commands = (self.prevUrl, self.nextUrl, self.loadUrl)
self.buttons = ButtonList(self, texts=texts, commands=commands)
self.buttons.grid(row=row, column=0)
self.url_entry = Entry(self, returnCallback=self.loadUrl)
self.url_entry.grid(row=row, column=1, columnspan=2, sticky=Tkinter.EW)
row = row + 1
frame = Frame(self)
frame.grid(row=row, column=0, columnspan=3, sticky=Tkinter.W)
self.createFindFrame(frame)
row = row + 1
self.grid_rowconfigure(row, weight=1)
self.help_text = ScrolledHtml(self,
width=width,
height=height,
xscroll=xscroll,
yscroll=yscroll,
startUrlCallback=self.startOpenUrl,
endUrlCallback=self.endOpenUrl,
enterLinkCallback=self.setLinkLabel,
leaveLinkCallback=self.setLinkLabel)
self.help_text.grid(row=row,
column=0,
columnspan=3,
sticky=Tkinter.NSEW)
row = row + 1
self.link_label = Label(self)
self.link_label.grid(row=row, column=0, columnspan=2, sticky=Tkinter.W)
button = memops.gui.Util.createDismissButton(self,
dismiss_cmd=self.close)
button.grid(row=row, column=2)
self.urls = []
self.current = -1
self.updateUrlList = True
self.setButtonState()
def __init__(self, guiParent, dataText, dataObjects, dataValues, helpText,
selectionText, **kw):
Frame.__init__(self, guiParent, **kw)
label = Label(self, text=dataText + ':', grid=(0, 0))
self.selectionList = PulldownList(self,
objects=dataObjects,
texts=dataValues,
grid=(0, 1))
label = Label(self, text=helpText, grid=(1, 0), gridSpan=(1, 2))
label = Label(self, text=selectionText + ':', grid=(2, 0))
self.selectionEntry = Entry(self, grid=(2, 1))
def body(self, guiFrame):
guiFrame.grid_columnconfigure(0, weight=1)
guiFrame.grid_rowconfigure(1, weight=1)
frame = LabelFrame(guiFrame, text='Options')
frame.grid(row=0,column=0,sticky='ew')
frame.grid_columnconfigure(5, weight=1)
# Choose type of symmetry set to define or change (if allready present in the model)
self.molLabel = Label(frame, text='Symmetry Operator:')
self.molLabel.grid(row=0,column=2,sticky='w')
self.symmCodePulldown = PulldownMenu(frame, callback=self.setSymmCode, entries=['NCS','C2','C3','C5'], do_initial_callback=False)
self.symmCodePulldown.grid(row=0,column=3,sticky='w')
frame = LabelFrame(guiFrame, text='Symmetry Operations')
frame.grid(row=1,column=0,sticky='nsew')
frame.grid_columnconfigure(0, weight=1)
frame.grid_rowconfigure(0, weight=1)
self.molSysPulldown = PulldownMenu(self, callback=self.setMolSystem, do_initial_callback=False)
self.chainSelect = MultiWidget(self, CheckButton, callback=self.setChains, minRows=0, useImages=False)
self.segStartEntry = IntEntry(self, returnCallback=self.setSegStart, width=6)
self.segLengthEntry = IntEntry(self, returnCallback=self.setSegLength, width=6)
headings = ['#','Symmetry\noperator','Mol System','Chains','Start\nresidue','Segment\nlength']
editWidgets = [None, None, self.molSysPulldown, self.chainSelect, self.segStartEntry, self.segLengthEntry]
editGetCallbacks = [None, None, self.getMolSystem, self.getChains, self.getSegStart, self.getSegLength]
editSetCallbacks = [None, self.setSymmCode, self.setMolSystem, self.setChains, self.setSegStart, self.setSegLength]
self.symmetryMatrix = ScrolledMatrix(frame,headingList=headings,
callback=self.selectSymmetry,
editWidgets=editWidgets,
editGetCallbacks=editGetCallbacks,
editSetCallbacks=editSetCallbacks)
self.symmetryMatrix.grid(row=0,column=0,sticky='nsew')
texts = ['Add Symmetry Set','Remove Symmetry Set']
commands = [self.addSymmetrySet,self.removeSymmetrySet]
self.buttonList = createDismissHelpButtonList(guiFrame, texts=texts, commands=commands, expands=True)
self.buttonList.grid(row=2,column=0,sticky='ew')
self.updateMolPartners()
self.notify(self.registerNotify)
#Temporary report of parameters
print self.molSystem
print self.molecules
print self.symmetrySet
print self.symmetryOp
print self.symmetryCode
def __init__(self, parent, analysis, orientation='horizontal', callback = None, *args, **kw):
self.analysis = analysis
self.callback = callback
apply(Frame.__init__, (self, parent) + args, kw)
label = Label(self, text='Experiment:')
label.grid(row=0, column=0, sticky='ne')
self.expt_list = ExperimentList(self, self.analysis.getExperiments,
callback=self.setSpectra)
self.expt_list.grid(row=0, column=1, sticky='nw')
if orientation in ['horizontal','h','H',Tkinter.HORIZONTAL]:
row = 0
col = 2
else:
row = 1
col = 0
label = Label(self, text='Spectrum:')
label.grid(row=row, column=col, sticky='ne')
self.spectrum_list = SpectrumList(self, self.getSpectra,
callback=self.setSpectrumProperties)
self.spectrum_list.grid(row=row, column=col+1, sticky='nw')
for func in notify_funcs:
Implementation.registerNotify(self.setExperiments, 'ccp.nmr.Nmr.Experiment', func)
Implementation.registerNotify(self.setSpectra, 'ccp.nmr.Nmr.DataSource', func)
def body(self, master):
#
# Popup window
#
row = 0
if self.topText:
label = Label(master, text= self.topText)
label.grid(row=row, column=0, columnspan = 2, sticky=Tkinter.EW)
row = row + 1
label = Label(master, text= self.text)
label.grid(row=row, column=0, sticky=Tkinter.EW)
self.menu = PulldownMenu(master, entries = self.selectionList, selected_index = self.selectedIndex)
self.menu.grid(row=row, column=1, sticky=Tkinter.E, ipadx = 20)
row = row + 1
texts = [ 'OK' ]
commands = [ self.ok ] # This calls 'ok' in BasePopup, this then calls 'apply' in here
if self.dismissButton:
buttons = createDismissHelpButtonList(master, texts=texts, commands=commands, dismiss_text = self.dismissText, help_url=self.help_url)
else:
buttons = createHelpButtonList(master, texts=texts, commands=commands, help_url=self.help_url)
buttons.grid(row=row, column=0, columnspan = 3)
def body(self, frame):
label = Label(frame, text=self.prompt)
if self.hide:
entry = Entry(frame, text=self.initVal, bg='white', show='*')
else:
entry = Entry(frame, text=self.initVal, bg='white')
label.grid(row=0, column=0, sticky=Tkinter.W)
entry.grid(row=1, column=0, sticky=Tkinter.W)
entry.focus_set() # for the keypresses
return entry
def body(self, master):
#
# Popup window
#
row = 0
label = Label(master, text= self.text)
label.grid(row=row, column=0, sticky=Tkinter.EW)
row = row + 1
self.multiSelect = ScrolledListbox(master,
width = 50,
height = 5,
selectmode = Tkinter.MULTIPLE,
initial_list = self.selectionList)
self.multiSelect.grid(row=row, column=0, sticky=Tkinter.E, ipadx = 20)
master.grid_columnconfigure(0, weight=1)
master.grid_rowconfigure(row, weight=1)
if self.selectedItems:
self.multiSelect.setSelectedItems(self.selectedItems)
if self.endText:
row = row + 1
label = Label(master, text= self.endText)
label.grid(row=row, column=0, sticky=Tkinter.EW)
row = row + 1
texts = [ 'OK' ]
commands = [ self.ok ] # This calls 'ok' in BasePopup, this then calls 'apply' in here
buttons = createDismissHelpButtonList(master, texts=texts, commands=commands, dismiss_text = self.dismissText, help_url=self.help_url)
buttons.grid(row=row, column=0)
def body(self, master):
master.grid_columnconfigure(0, weight=1)
for i in range(3):
master.grid_rowconfigure(i, weight=1)
self.geometry('600x400')
# Master is the owner widget (not self.parent) - parent of the widget here
row = 0
label = Label(master,
text="Residue %s-%d" %
(self.nmrRes.molResidue.ccpCode, self.nmrRes.seqCode))
label.grid(row=row, column=0, sticky=Tkinter.W)
row = row + 1
label = Label(master, text=self.message)
label.grid(row=row, column=0, sticky=Tkinter.W)
row = row + 1
self.menu = PulldownMenu(master, entries=self.optionList)
self.menu.grid(row=row, column=0, sticky=Tkinter.EW)
row = row + 1
texts = ['OK']
commands = [
self.ok
] # This calls 'ok' in BasePopup, this then calls 'apply' in here
buttons = createHelpButtonList(master,
texts=texts,
commands=commands,
help_url=self.help_url)
buttons.grid(row=row, column=0)
def __init__(self, parent, peakList):
apply(Frame.__init__, (self, parent) )
#parent.grid_columnconfigure(0, weight=1)
#parent.grid_rowconfigure(1, weight=1)
#self.grid_columnconfigure(1, weight=1)
#self.grid_columnconfigure(2, weight=1)
self.parent = parent
self.peakList = peakList
self.specLabel = Label(self, text='Spectrum: ' )
self.listLabel = Label(self, text='Peak List: ' )
self.dimLabel = Label(self, text='Dimension' )
self.adjustLabel = Label(self, text='Adjustment')
self.specLabel.grid(row = 0, column = 0, columnspan=2, sticky='nsew')
self.listLabel.grid(row = 0, column = 2, columnspan=1, sticky='nsew')
self.dimLabel.grid(row = 1, column = 0, columnspan=1, sticky='nsew')
self.adjustLabel.grid(row = 1, column = 1, columnspan=2, sticky='nsew')
self.goButton = Button(self, text='Go!', command=self.go,
tipText='Commit the re-referencing adjustment')
self.clearButton = Button(self, text='Clear', command=self.update,
tipText='Clear the input re-referencing values')
self.cancelButton = Button(self, text='Cancel', command=self.close,
tipText='Abort operation without making any changes')
self.update()
def body(self, master):
#
# Popup gui
#
# First row
row = 0
label = Label(master, text="Choose a naming system:")
label.grid(row=row, column=0, sticky=Tkinter.W)
row = row + 1
label = Label(master, text="(% matches in brackets)")
label.grid(row=row, column=0, sticky=Tkinter.W)
row = row + 1
self.menu = PulldownMenu(master, entries=self.namingSysList)
self.menu.grid(row=row, column=0, sticky=Tkinter.EW)
row = row + 1
texts = ['OK']
commands = [
self.ok
] # This calls 'ok' in BasePopup, this then calls 'apply' in here
buttons = createDismissHelpButtonList(master,
texts=texts,
commands=commands,
dismiss_text='Exit',
help_url=self.help_url)
buttons.grid(row=row, column=0)
def body(self, master):
master.grid_rowconfigure(0, weight=1)
master.grid_columnconfigure(1, weight=1)
row = 0
if (self.message):
label = Label(master, text=self.message)
label.grid(row=row, column=0, columnspan=2, sticky=Tkinter.W)
row = row + 1
if (self.label):
label = Label(master, text=self.label)
label.grid(row=row, column=0, sticky=Tkinter.W)
self.itemMenu = PulldownMenu(master, entries=self.entries)
self.itemMenu.grid(row=row, column=1, sticky=Tkinter.EW)
row = row + 1
texts = [self.select_text]
commands = [self.ok]
buttons = createDismissHelpButtonList(master,
texts=texts,
commands=commands,
dismiss_text='Cancel')
buttons.grid(row=row, column=0, columnspan=2, sticky=Tkinter.EW)
def body(self, guiParent):
self.geometry('600x300')
guiParent.grid_columnconfigure(1, weight=1)
url = ''
if self.server:
url = self.server.url
label = Label(guiParent, text='Server location: %s' % url)
label.grid(row=0, column=0, sticky='w', columnspan=2)
label = Label(guiParent,
text='Installation root: %s%s' %
(self.installRoot, os.sep))
label.grid(row=1, column=0, sticky='w', columnspan=2)
editWidgets = [None] * 5
editGetCallbacks = [None, self.toggleSelected, None, None, None]
editSetCallbacks = [None] * 5
guiParent.grid_rowconfigure(2, weight=1)
headingList = [
'File', 'Install?', 'Date', 'Relative Path', 'Priority', 'Comments'
]
self.scrolledMatrix = ScrolledMatrix(guiParent,
headingList=headingList,
highlightType=0,
editWidgets=editWidgets,
callback=self.selectCell,
editGetCallbacks=editGetCallbacks,
editSetCallbacks=editSetCallbacks)
self.scrolledMatrix.grid(row=2, column=0, columnspan=2, sticky='nsew')
if self.exitOnClose:
txt = 'Quit'
cmd = sys.exit
else:
txt = 'Close'
cmd = self.close
texts = ['Refresh List', 'Select All', 'Install Selected', txt]
commands = [self.updateFiles, self.selectAll, self.install, cmd]
self.buttonList = ButtonList(guiParent,
texts=texts,
commands=commands,
expands=True)
self.buttonList.grid(row=3, column=0, columnspan=2, sticky='ew')
if self.server:
for fileUpdate in self.server.fileUpdates:
fileUpdate.isSelected = False
#self.update()
# need self.updateFiles, not just self.update
# because otherwise the 2.0.5 to 2.0.6 upgrades do not work
# (self.server not set on first pass so need call to updateFiles here)
self.updateFiles()
def body(self, guiFrame):
'''This method describes the outline of the body of the
application.
args: guiFrame: frame the body should live in.
'''
self.geometry('900x700')
guiFrame.grid_columnconfigure(0, weight=1)
guiFrame.grid_rowconfigure(0, weight=1)
tabbedFrame = TabbedFrame(guiFrame,
options=['Spectra',
'Annealing',
'Results',
'Bulk Transfer Assignments To Project',
'Save and Load'],
callback=self.toggleTab,
grid=(0, 0))
self.tabbedFrame = tabbedFrame
autoFrame, NAFrame, resultsFrame, assignFrame, saveFrame = tabbedFrame.frames
self.spectrumSelectionTab = SpectrumSelectionTab(self, autoFrame)
self.assignTab = AssignMentTransferTab(self, assignFrame)
self.saveLoadTab = SaveLoadTab(self, saveFrame)
self.annealingSettingsTab = AnnealingSettingsTab(self, NAFrame)
self.resultsTab = ResultsTab(self, resultsFrame)
bottomButtons = UtilityButtonList(tabbedFrame.sideFrame,
helpUrl='www.google.com')
bottomButtons.grid(row=0, column=0, sticky='e')
self.infoLabel = Label(guiFrame, text=' ')
self.infoLabel.grid(row=2, column=0, sticky='w')
self.waiting = False
self.updateAfter()
self.administerNotifiers(self.registerNotify)
def __init__(self, parent, application, *args, **kw):
project = application.project
simStore = project.findFirstNmrSimStore(application=APP_NAME) or \
project.newNmrSimStore(application=APP_NAME, name=APP_NAME)
self.application = application
self.residue = None
self.structure = None
self.serverCredentials = None
self.iCingBaseUrl = DEFAULT_URL
self.resultsUrl = None
self.chain = None
self.nmrProject = application.nmrProject
self.serverDone = False
NmrSimRunFrame.__init__(self, parent, project, simStore, *args, **kw)
# # # # # # New Structure Frame # # # # #
self.structureFrame.grid_forget()
tab = self.tabbedFrame.frames[0]
frame = Frame(tab, grid=(1,0))
frame.expandGrid(2,1)
div = LabelDivider(frame, text='Structures', grid=(0,0), gridSpan=(1,2))
label = Label(frame, text='Ensemble: ', grid=(1,0))
self.structurePulldown = PulldownList(frame, callback=self.changeStructure, grid=(1,1))
headingList = ['Model','Use']
editWidgets = [None,None]
editGetCallbacks = [None,self.toggleModel]
editSetCallbacks = [None,None,]
self.modelTable = ScrolledMatrix(frame, grid=(2,0), gridSpan=(1,2),
callback=self.selectStructModel,
editWidgets=editWidgets,
editGetCallbacks=editGetCallbacks,
editSetCallbacks=editSetCallbacks,
headingList=headingList)
texts = ['Activate Selected','Inactivate Selected']
commands = [self.activateModels, self.disableModels]
buttons = ButtonList(frame, texts=texts, commands=commands, grid=(3,0), gridSpan=(1,2))
# # # # # # Submission frame # # # # # #
tab = self.tabbedFrame.frames[1]
tab.expandGrid(1,0)
frame = LabelFrame(tab, text='Server Job Submission', grid=(0,0))
frame.expandGrid(None,2)
srow = 0
label = Label(frame, text='iCing URL:', grid=(srow, 0))
urls = [DEFAULT_URL,]
self.iCingBaseUrlPulldown = PulldownList(frame, texts=urls, objects=urls, index=0, grid=(srow,1))
srow +=1
label = Label(frame, text='Results File:', grid=(srow, 0))
self.resultFileEntry = Entry(frame, bd=1, text='', grid=(srow,1), width=50)
self.setZipFileName()
button = Button(frame, text='Choose File', bd=1, sticky='ew',
command=self.chooseZipFile, grid=(srow, 2))
srow +=1
label = Label(frame, text='Results URL:', grid=(srow, 0))
self.resultUrlEntry = Entry(frame, bd=1, text='', grid=(srow,1), width=50)
button = Button(frame, text='View Results HTML', bd=1, sticky='ew',
command=self.viewHtmlResults, grid=(srow, 2))
srow +=1
texts = ['Submit Project!', 'Check Run Status',
'Purge Server Result', 'Download Results']
commands = [self.runCingServer, self.checkStatus,
self.purgeCingServer, self.downloadResults]
self.buttonBar = ButtonList(frame, texts=texts, commands=commands,
grid=(srow, 0), gridSpan=(1,3))
for button in self.buttonBar.buttons[:1]:
button.config(bg=CING_BLUE)
# # # # # # Residue frame # # # # # #
frame = LabelFrame(tab, text='Residue Options', grid=(1,0))
frame.expandGrid(1,1)
label = Label(frame, text='Chain: ')
label.grid(row=0,column=0,sticky='w')
self.chainPulldown = PulldownList(frame, callback=self.changeChain)
self.chainPulldown.grid(row=0,column=1,sticky='w')
headingList = ['#','Residue','Linking','Decriptor','Use?']
editWidgets = [None,None,None,None,None]
editGetCallbacks = [None,None,None,None,self.toggleResidue]
editSetCallbacks = [None,None,None,None,None,]
self.residueMatrix = ScrolledMatrix(frame,
headingList=headingList,
multiSelect=True,
editWidgets=editWidgets,
editGetCallbacks=editGetCallbacks,
editSetCallbacks=editSetCallbacks,
callback=self.selectResidue)
self.residueMatrix.grid(row=1, column=0, columnspan=2, sticky = 'nsew')
texts = ['Activate Selected','Inactivate Selected']
commands = [self.activateResidues, self.deactivateResidues]
self.resButtons = ButtonList(frame, texts=texts, commands=commands,)
self.resButtons.grid(row=2, column=0, columnspan=2, sticky='ew')
"""
# # # # # # Validate frame # # # # # #
frame = LabelFrame(tab, text='Validation Options', grid=(2,0))
frame.expandGrid(None,2)
srow = 0
self.selectCheckAssign = CheckButton(frame)
self.selectCheckAssign.grid(row=srow, column=0,sticky='nw' )
self.selectCheckAssign.set(True)
label = Label(frame, text='Assignments and shifts')
label.grid(row=srow,column=1,sticky='nw')
srow += 1
self.selectCheckResraint = CheckButton(frame)
self.selectCheckResraint.grid(row=srow, column=0,sticky='nw' )
self.selectCheckResraint.set(True)
label = Label(frame, text='Restraints')
label.grid(row=srow,column=1,sticky='nw')
srow += 1
self.selectCheckQueen = CheckButton(frame)
self.selectCheckQueen.grid(row=srow, column=0,sticky='nw' )
self.selectCheckQueen.set(False)
label = Label(frame, text='QUEEN')
label.grid(row=srow,column=1,sticky='nw')
srow += 1
self.selectCheckScript = CheckButton(frame)
self.selectCheckScript.grid(row=srow, column=0,sticky='nw' )
self.selectCheckScript.set(False)
label = Label(frame, text='User Python script\n(overriding option)')
label.grid(row=srow,column=1,sticky='nw')
self.validScriptEntry = Entry(frame, bd=1, text='')
self.validScriptEntry.grid(row=srow,column=2,sticky='ew')
scriptButton = Button(frame, bd=1,
command=self.chooseValidScript,
text='Browse')
scriptButton.grid(row=srow,column=3,sticky='ew')
"""
# # # # # # # # # #
self.update(simStore)
self.administerNotifiers(application.registerNotify)
def body(self, guiFrame):
row = 0
col =0
# frame = Frame( guiFrame )
# frame.grid(row=row, column=col, sticky='news')
self.menuBar = Menu( guiFrame)
self.menuBar.grid( row=row, column=col, sticky='ew')
#----------------------------------------------------------------------------------
# Project frame
#----------------------------------------------------------------------------------
# guiFrame.grid_columnconfigure(row, weight=1)
# frame = LabelFrame(guiFrame, text='Project', font=medFont)
row = +1
col =0
frame = LabelFrame(guiFrame, text='Project', **labelFrameAttributes )
print '>', frame.keys()
frame.grid(row=row, column=col, sticky='nsew' )
frame.grid_columnconfigure(2, weight=1)
# frame.grid_rowconfigure(0, weight=1)
srow = 0
self.projectOptions = ['old','new from PDB','new from CCPN','new from CYANA']
self.projOptionsSelect = RadioButtons(frame, selected_index=0, entries=self.projectOptions, direction='vertical',
select_callback=self.updateGui
)
self.projOptionsSelect.grid(row=srow,column=0,rowspan=len(self.projectOptions),columnspan=2, sticky='w')
if self.options.name:
text = self.options.name
else:
text=''
# end if
self.projEntry = Entry(frame, bd=1, text=text, returnCallback=self.updateGui)
self.projEntry.grid(row=srow,column=2,columnspan=2,sticky='ew')
# self.projEntry.bind('<Key>', self.updateGui)
self.projEntry.bind('<Leave>', self.updateGui)
projButton = Button(frame, bd=1,command=self.chooseOldProjectFile, text='browse')
projButton.grid(row=srow,column=3,sticky='ew')
srow += 1
self.pdbEntry = Entry(frame, bd=1, text='')
self.pdbEntry.grid(row=srow,column=2,sticky='ew')
self.pdbEntry.bind('<Leave>', self.updateGui)
pdbButton = Button(frame, bd=1,command=self.choosePdbFile, text='browse')
pdbButton.grid(row=srow,column=3,sticky='ew')
srow += 1
self.ccpnEntry = Entry(frame, bd=1, text='')
self.ccpnEntry.grid(row=srow,column=2,sticky='ew')
self.ccpnEntry.bind('<Leave>', self.updateGui)
ccpnButton = Button(frame, bd=1,command=self.chooseCcpnFile, text='browse')
ccpnButton.grid(row=srow,column=3,sticky='ew')
srow += 1
self.cyanaEntry = Entry(frame, bd=1, text='')
self.cyanaEntry.grid(row=srow,column=2,sticky='ew')
self.cyanaEntry.bind('<Leave>', self.updateGui)
cyanaButton = Button(frame, bd=1,command=self.chooseCyanaFile, text='browse')
cyanaButton.grid(row=srow,column=3,sticky='ew')
#Empty row
srow += 1
label = Label(frame, text='')
label.grid(row=srow,column=0,sticky='nw')
srow += 1
label = Label(frame, text='Project name:')
label.grid(row=srow,column=0,sticky='nw')
self.nameEntry = Entry(frame, bd=1, text='')
self.nameEntry.grid(row=srow,column=2,sticky='w')
#Empty row
srow += 1
label = Label(frame, text='')
label.grid(row=srow,column=0,sticky='nw')
srow += 1
self.openProjectButton = Button(frame, command=self.openProject, text='Open Project', **actionButtonAttributes )
self.openProjectButton.grid(row=srow,column=0, columnspan=4, sticky='ew')
#----------------------------------------------------------------------------------
# status
#----------------------------------------------------------------------------------
# guiFrame.grid_columnconfigure(1, weight=0)
srow = 0
frame = LabelFrame(guiFrame, text='Status', **labelFrameAttributes)
frame.grid( row=srow, column=1, sticky='wnes')
self.projectStatus = Text(frame, height=11, width=70, borderwidth=0, relief='flat')
self.projectStatus.grid(row=0, column=0, sticky='wen')
#Empty row
srow += 1
label = Label(frame, text='')
label.grid(row=srow,column=0,sticky='nw')
srow += 1
self.closeProjectButton = Button(frame, command=self.closeProject, text='Close Project', **actionButtonAttributes)
self.closeProjectButton.grid(row=srow,column=0, columnspan=4, sticky='ew')
#----------------------------------------------------------------------------------
# Validate frame
#----------------------------------------------------------------------------------
row +=1
col=0
frame = LabelFrame(guiFrame, text='Validate', **labelFrameAttributes)
# frame = LabelFrame(guiFrame, text='Validate', font=medFont)
frame.grid(row=row, column=col, sticky='nsew')
# frame.grid_columnconfigure(2, weight=1)
frame.grid_rowconfigure(0, weight=1)
srow = 0
# label = Label(frame, text='validation')
# label.grid(row=srow,column=0,sticky='nw')
#
# self.selectDoValidation = CheckButton(frame)
# self.selectDoValidation.grid(row=srow, column=1,sticky='nw' )
# self.selectDoValidation.set(True)
#
# srow += 1
# label = Label(frame, text='')
# label.grid(row=srow,column=0,sticky='nw')
#
# srow += 1
label = Label(frame, text='checks')
label.grid(row=srow,column=0,sticky='nw')
self.selectCheckAssign = CheckButton(frame)
self.selectCheckAssign.grid(row=srow, column=1,sticky='nw' )
self.selectCheckAssign.set(True)
label = Label(frame, text='assignments and shifts')
label.grid(row=srow,column=2,sticky='nw')
# srow += 1
# self.selectCheckQueen = CheckButton(frame)
# self.selectCheckQueen.grid(row=srow, column=4,sticky='nw' )
# self.selectCheckQueen.set(False)
# label = Label(frame, text='QUEEN')
# label.grid(row=srow,column=5,sticky='nw')
#
# queenButton = Button(frame, bd=1,command=None, text='setup')
# queenButton.grid(row=srow,column=6,sticky='ew')
srow += 1
self.selectCheckResraint = CheckButton(frame)
self.selectCheckResraint.grid(row=srow, column=1,sticky='nw' )
self.selectCheckResraint.set(True)
label = Label(frame, text='restraints')
label.grid(row=srow,column=2,sticky='nw')
srow += 1
self.selectCheckStructure = CheckButton(frame)
self.selectCheckStructure.grid(row=srow, column=1,sticky='nw' )
self.selectCheckStructure.set(True)
label = Label(frame, text='structural')
label.grid(row=srow,column=2,sticky='nw')
srow += 1
self.selectMakeHtml = CheckButton(frame)
self.selectMakeHtml.grid(row=srow, column=1,sticky='nw' )
self.selectMakeHtml.set(True)
label = Label(frame, text='generate HTML')
label.grid(row=srow,column=2,sticky='nw')
srow += 1
self.selectCheckScript = CheckButton(frame)
self.selectCheckScript.grid(row=srow, column=1,sticky='nw' )
self.selectCheckScript.set(False)
label = Label(frame, text='user script')
label.grid(row=srow,column=0,sticky='nw')
self.validScriptEntry = Entry(frame, bd=1, text='')
self.validScriptEntry.grid(row=srow,column=2,columnspan=3, sticky='ew')
scriptButton = Button(frame, bd=1,command=self.chooseValidScript, text='browse')
scriptButton.grid(row=srow,column=5,sticky='ew')
srow += 1
label = Label(frame, text='ranges')
label.grid(row=srow,column=0,sticky='nw')
self.rangesEntry = Entry( frame, text='' )
self.rangesEntry.grid( row=srow, column=2, columnspan=3, sticky='ew')
# self.validScriptEntry = Entry(frame, bd=1, text='')
# self.validScriptEntry.grid(row=srow,column=3,sticky='ew')
#
# scriptButton = Button(frame, bd=1,command=self.chooseValidScript, text='browse')
# scriptButton.grid(row=srow,column=4,sticky='ew')
srow += 1
texts = ['Run Validation','View Results','Setup QUEEN']
commands = [self.runCing, None, None]
buttonBar = ButtonList(frame, texts=texts, commands=commands,expands=True)
buttonBar.grid(row=srow, column=0, columnspan=6, sticky='ew')
for button in buttonBar.buttons:
button.config(**actionButtonAttributes)
# end for
self.runButton = buttonBar.buttons[0]
self.viewResultButton = buttonBar.buttons[1]
self.queenButton = buttonBar.buttons[2]
#----------------------------------------------------------------------------------
# Miscellaneous frame
#----------------------------------------------------------------------------------
row +=0
col=1
# frame = LabelFrame(guiFrame, text='Miscellaneous', font=medFont)
frame = LabelFrame(guiFrame, text='Miscellaneous', **labelFrameAttributes)
frame.grid(row=row, column=col, sticky='news')
frame.grid_columnconfigure(2, weight=1)
frame.grid_columnconfigure(4, weight=1,minsize=30)
frame.grid_rowconfigure(0, weight=1)
# Exports
srow = 0
label = Label(frame, text='export to')
label.grid(row=srow,column=0,sticky='nw')
self.selectExportXeasy = CheckButton(frame)
self.selectExportXeasy.grid(row=srow, column=1,sticky='nw' )
self.selectExportXeasy.set(True)
label = Label(frame, text='Xeasy, Sparky, TALOS, ...')
label.grid(row=srow,column=2,sticky='nw')
srow += 1
self.selectExportCcpn = CheckButton(frame)
self.selectExportCcpn.grid(row=srow, column=1,sticky='nw' )
self.selectExportCcpn.set(True)
label = Label(frame, text='CCPN')
label.grid(row=srow,column=2,sticky='nw')
srow += 1
self.selectExportQueen = CheckButton(frame)
self.selectExportQueen.grid(row=srow, column=1,sticky='nw' )
self.selectExportQueen.set(True)
label = Label(frame, text='QUEEN')
label.grid(row=srow,column=2,sticky='nw')
srow += 1
self.selectExportRefine = CheckButton(frame)
self.selectExportRefine.grid(row=srow, column=1,sticky='nw' )
self.selectExportRefine.set(True)
label = Label(frame, text='refine')
label.grid(row=srow,column=2,sticky='nw')
srow += 1
label = Label(frame, text='')
label.grid(row=srow,column=0,sticky='nw')
# User script
srow += 1
label = Label(frame, text='user script')
label.grid(row=srow,column=0,sticky='nw')
self.selectMiscScript = CheckButton(frame)
self.selectMiscScript.grid(row=srow, column=1,sticky='nw' )
self.selectMiscScript.set(False)
self.miscScriptEntry = Entry(frame, bd=1, text='')
self.miscScriptEntry.grid(row=srow,column=3,sticky='ew')
script2Button = Button(frame, bd=1,command=self.chooseMiscScript, text='browse')
script2Button.grid(row=srow,column=4,sticky='ew')
srow += 1
texts = ['Export','Run Script']
commands = [None, None]
buttonBar = ButtonList(frame, texts=texts, commands=commands,expands=True)
buttonBar.grid(row=srow, column=0, columnspan=5, sticky='ew')
for button in buttonBar.buttons:
button.config(**actionButtonAttributes)
# end for
self.exportButton = buttonBar.buttons[0]
self.scriptButton = buttonBar.buttons[1]
#----------------------------------------------------------------------------------
# Textarea
#----------------------------------------------------------------------------------
row +=1
guiFrame.grid_rowconfigure(row, weight=1)
self.outputTextBox = ScrolledText(guiFrame)
self.outputTextBox.grid(row=row, column=0, columnspan=2, sticky='nsew')
self.redirectConsole()
#----------------------------------------------------------------------------------
# Buttons
#----------------------------------------------------------------------------------
row +=1
col=0
texts = ['Quit', 'Help']
commands = [self.close, None]
self.buttonBar = ButtonList(guiFrame, texts=texts, commands=commands,expands=True)
self.buttonBar.grid(row=row, column=col, columnspan=2, sticky='ew')
# self.openProjectButton = self.buttonBar.buttons[0]
# self.closeProjectButton = self.buttonBar.buttons[1]
# self.runButton = self.buttonBar.buttons[0]
# self.viewResultButton = self.buttonBar.buttons[1]
for button in self.buttonBar.buttons:
button.config(**actionButtonAttributes)
class ViewAssignmentPopup(BasePopup):
'''The main popup that is shown when the macro is loaded.'''
def __init__(self, parent, controler, *args, **kw):
self.font = 'Helvetica 10'
self.sFont = 'Helvetica %d'
self.project = parent.project
self.guiParent = parent
self.sourceName = 'RefDB'
self.connector = controler
self.tabbedFrame = None
self.saveLoadTab = None
self.assignTab = None
self.spectrumSelectionTab = None
self.resultsTab = None
self.annealingSettingsTab = None
self.infoLabel = None
self.waiting = False
BasePopup.__init__(self, parent, title="Assignment Suggestions", **kw)
def open(self):
'''Open the popup. A standard method.'''
self.updateAfter()
BasePopup.open(self)
def body(self, guiFrame):
'''This method describes the outline of the body of the
application.
args: guiFrame: frame the body should live in.
'''
self.geometry('900x700')
guiFrame.grid_columnconfigure(0, weight=1)
guiFrame.grid_rowconfigure(0, weight=1)
tabbedFrame = TabbedFrame(guiFrame,
options=['Spectra',
'Annealing',
'Results',
'Bulk Transfer Assignments To Project',
'Save and Load'],
callback=self.toggleTab,
grid=(0, 0))
self.tabbedFrame = tabbedFrame
autoFrame, NAFrame, resultsFrame, assignFrame, saveFrame = tabbedFrame.frames
self.spectrumSelectionTab = SpectrumSelectionTab(self, autoFrame)
self.assignTab = AssignMentTransferTab(self, assignFrame)
self.saveLoadTab = SaveLoadTab(self, saveFrame)
self.annealingSettingsTab = AnnealingSettingsTab(self, NAFrame)
self.resultsTab = ResultsTab(self, resultsFrame)
bottomButtons = UtilityButtonList(tabbedFrame.sideFrame,
helpUrl='www.google.com')
bottomButtons.grid(row=0, column=0, sticky='e')
self.infoLabel = Label(guiFrame, text=' ')
self.infoLabel.grid(row=2, column=0, sticky='w')
self.waiting = False
self.updateAfter()
self.administerNotifiers(self.registerNotify)
def toggleTab(self, index):
'''Toggle to a specific tab.
args: index: index of tab.
'''
pass
def administerNotifiers(self, notifyFunc):
'''Subscribing to get messages when parts of
the data model of the project changes.
'''
notifyFunc(self.spectrumSelectionTab.update,
'ccp.nmr.Nmr.Experiment', 'setName')
notifyFunc(self.spectrumSelectionTab.update,
'ccp.nmr.Nmr.DataSource', 'setName')
notifyFunc(self.spectrumSelectionTab.update,
'ccp.nmr.Nmr.DataSource', 'delete')
notifyFunc(self.spectrumSelectionTab.update,
'ccp.nmr.Nmr.DataSource', '__init__')
notifyFunc(self.annealingSettingsTab.updateChains,
'ccp.molecule.MolSystem.Chain', 'delete')
notifyFunc(self.annealingSettingsTab.updateChains,
'ccp.molecule.MolSystem.Chain', '__init__')
def updateAfter(self, *opt):
'''update views, but waits untill all functions have returned.'''
if self.waiting:
return
else:
self.waiting = True
self.after_idle(self.update)
def update(self):
'''update'''
self.toggleTab(self.tabbedFrame.selected)
self.waiting = False
def destroy(self):
'''Destroy the popup.'''
self.administerNotifiers(self.unregisterNotify)
BasePopup.destroy(self)
def updateInfoText(self, string):
'''Update the text shown at the bottom of the GUI.
args: string: the string displayed to the user.
'''
self.infoLabel.set(string)
self.infoLabel.update()
