Python merge_hits Examples

Example #1

File: merge_test.py Project: gturco/find_cns

 def test_merge_hits(self):
     hits = tuple(self.missed_genes_grouped["Os03g49400"])
     hits = list(hits)
     merged_hit = merge_hits(hits,self.old_bed, self.missed_genes_dict)
     self.assertEqual(len(merged_hit),1)
     self.assertEqual(len(merged_hit['sorghum_v1_1_9901089_9901320']['locs']),3)
     self.assertEqual(merged_hit['sorghum_v1_1_9901089_9901320']['start'],9896924)
     self.assertEqual(merged_hit['sorghum_v1_1_9901089_9901320']['end'],9901320)

Example #2

File: merge_test.py Project: yuzhenpeng/find_cns

 def test_merge_hits(self):
     hits = tuple(self.missed_genes_grouped["Os03g49400"])
     hits = list(hits)
     merged_hit = merge_hits(hits, self.old_bed, self.missed_genes_dict)
     self.assertEqual(len(merged_hit), 1)
     self.assertEqual(
         len(merged_hit['sorghum_v1_1_9901089_9901320']['locs']), 3)
     self.assertEqual(merged_hit['sorghum_v1_1_9901089_9901320']['start'],
                      9896924)
     self.assertEqual(merged_hit['sorghum_v1_1_9901089_9901320']['end'],
                      9901320)

Example #3

File: merge_test.py Project: yuzhenpeng/find_cns

 def test_merge_hits_none(self):
     ## none of the hits should merge
     hits = (self.missed_genes_grouped["Os01g58037"])
     merged_hit = merge_hits(hits, self.old_bed, self.missed_genes_dict)
     self.assertEqual(len(merged_hit), 5)

Example #4

File: merge_test.py Project: gturco/find_cns

 def test_merge_hits_none(self):
     ## none of the hits should merge
     hits = (self.missed_genes_grouped["Os01g58037"])
     merged_hit = merge_hits(hits,self.old_bed,self.missed_genes_dict)
     self.assertEqual(len(merged_hit),5)