def test_merge_hits(self):
hits = tuple(self.missed_genes_grouped["Os03g49400"])
hits = list(hits)
merged_hit = merge_hits(hits,self.old_bed, self.missed_genes_dict)
self.assertEqual(len(merged_hit),1)
self.assertEqual(len(merged_hit['sorghum_v1_1_9901089_9901320']['locs']),3)
self.assertEqual(merged_hit['sorghum_v1_1_9901089_9901320']['start'],9896924)
self.assertEqual(merged_hit['sorghum_v1_1_9901089_9901320']['end'],9901320)
def test_merge_hits(self):
hits = tuple(self.missed_genes_grouped["Os03g49400"])
hits = list(hits)
merged_hit = merge_hits(hits, self.old_bed, self.missed_genes_dict)
self.assertEqual(len(merged_hit), 1)
self.assertEqual(
len(merged_hit['sorghum_v1_1_9901089_9901320']['locs']), 3)
self.assertEqual(merged_hit['sorghum_v1_1_9901089_9901320']['start'],
9896924)
self.assertEqual(merged_hit['sorghum_v1_1_9901089_9901320']['end'],
9901320)
def test_merge_hits_none(self):
## none of the hits should merge
hits = (self.missed_genes_grouped["Os01g58037"])
merged_hit = merge_hits(hits, self.old_bed, self.missed_genes_dict)
self.assertEqual(len(merged_hit), 5)
def test_merge_hits_none(self):
## none of the hits should merge
hits = (self.missed_genes_grouped["Os01g58037"])
merged_hit = merge_hits(hits,self.old_bed,self.missed_genes_dict)
self.assertEqual(len(merged_hit),5)