Python point_to_section_end Examples

Example #1

def test_point_to_section_end():
    cell = tested.get_NRN_cell(SIMPLE)
    assert (tested.point_to_section_end(cell.icell.all, [-8, 10, 0]) == 6)

    assert (tested.point_to_section_end(cell.icell.all, [-8, 10, 2]) == None)

    assert (tested.point_to_section_end(cell.icell.all, [-8, 10, 2],
                                        atol=10) == 3)

Example #2

File: test_nrnhines.py Project: adrien-berchet/morph-tool

def test_point_to_section_end():
    cell = tested.get_NRN_cell(SIMPLE)
    assert_equal(tested.point_to_section_end(cell.icell.all, [-8, 10, 0]),
                 6)

    assert_equal(tested.point_to_section_end(cell.icell.all, [-8, 10, 2]),
                 None)

    assert_equal(tested.point_to_section_end(cell.icell.all, [-8, 10, 2],
                                             atol=10),
                 3)

Example #3

File: test_nrnhines.py Project: adrien-berchet/morph-tool

def _to_be_isolated(morphology_path, point):
    """Convert a point position to NEURON section index and return cell name and id.

    Args:
        morphology_path (Path): path to morphology
        point (list/ndarray): 3d point
    """
    cell = tested.get_NRN_cell(morphology_path)
    return tested.point_to_section_end(cell.icell.all, point)