def calculate_angles(Input_Cords):
# Constants
scalling_const = np.sqrt(.3)
f = 195 * scalling_const
t = 375 * scalling_const
f = f * (10 ^ -3)
t = t * (10 ^ -3)
angle_list = []
for coord in Input_Cords:
X = (coord[0]) * (10 ^ -3)
Y = (-coord[1]) * (10 ^ -3)
H = np.sqrt(math.power(X, 2) + math.power(Y, 2))
alpha = math.acos(
(math.power(t, 2) - math.power(f, 2) - math.power(H, 2)) /
(2 * f * H))
beta = math.atan(Y / X)
T_1 = alpha - beta + np.pi
T_2 = math.acos(
(math.power(H, 2) - math.power(f, 2) - math.power(t, 2)) /
(2 * f * t)) + np.pi
angles = [T_1, T_2]
angle_list.append(angles)
return angle_list
def calAngles(target, segments):
x = target.x
y = target.y
z = target.z
s1 = segments[0]
s2 = segments[1]
s3 = segments[2]
theta0 = atan(y / x)
theta1 = acos((s1**2 - z**2 + (s1 - z)**2)/(2*s1*sqrt(x**2 + y**2 + (s1 - z)**2))) \
+ acos((s2**2 - s3**2 + x**2 + y**2 + (s1 - z)**2)/(2*s2*sqrt(x**2 + y**2 + (s1 - z)**2)))
theta2 = acos((s2**2 + s3**2 - x**2 - y**2 - (s1 - z)**2) / (2 * s2 * s3))
return [theta0, theta1, theta2]
def get_ang(pos_1, pos_2, pos_3):
mmp.mp.dps = 30
x1, y1, z1 = get_each(pos_1)
x2, y2, z2 = get_each(pos_2)
x3, y3, z3 = get_each(pos_3)
cosb = (x1 * x2 + y1 * y2 + z1 * z2)/(mmp.sqrt(x1**2 + y1**2 + z1**2) * mmp.sqrt(x2**2 + y2**2 + z2**2))
cosc = (x1 * x3 + y1 * y3 + z1 * z3)/(mmp.sqrt(x1**2 + y1**2 + z1**2) * mmp.sqrt(x3**2 + y3**2 + z3**2))
cosa = (x3 * x2 + y3 * y2 + z3 * z2)/(mmp.sqrt(x3**2 + y3**2 + z3**2) * mmp.sqrt(x2**2 + y2**2 + z2**2))
sinb = mmp.sin(mmp.acos(cosb))
sinc = mmp.sin(mmp.acos(cosc))
cosA = (cosa - cosb * cosc) /(sinb * sinc)
return mmp.acos(cosA)
def Pinv(self, P):
from mpmath import ellipf, sqrt, asin, acos, mpc, mpf
Delta = self.Delta
e1, e2, e3 = self.__roots
if self.__ng3:
P = -P
if Delta > 0:
m = (e2 - e3) / (e1 - e3)
retval = (1 / sqrt(e1 - e3)) * ellipf(
asin(sqrt((e1 - e3) / (P - e3))), m=m)
elif Delta < 0:
H2 = (sqrt((e2 - e3) * (e2 - e1))).real
assert (H2 > 0)
m = mpf(1) / mpf(2) - 3 * e2 / (4 * H2)
retval = 1 / (2 * sqrt(H2)) * ellipf(acos(
(e2 - P + H2) / (e2 - P - H2)),
m=m)
else:
g2, g3 = self.__invariants
if g2 == 0 and g3 == 0:
retval = 1 / sqrt(P)
else:
c = e1 / 2
retval = (1 / sqrt(3 * c)) * asin(sqrt((3 * c) / (P + c)))
if self.__ng3:
retval /= mpc(0, 1)
alpha, beta, _, _ = self.reduce_to_fpp(retval)
T1, T2 = self.periods
return T1 * alpha + T2 * beta
def ellipse(r, a, incl):
"""Equation of an ellipse, reusing the definition of cos_gamma.
This equation can be used for calculations in the Newtonian limit (large P = b, small a)
or to visualize the equatorial plane."""
g = mpmath.acos(cos_gamma(a, incl))
b_ = r * mpmath.sin(g)
return b_
def Pinv(self,P): from mpmath import ellipf, sqrt, asin, acos, mpc, mpf Delta = self.Delta e1, e2, e3 = self.__roots if self.__ng3: P = -P if Delta > 0: m = (e2 - e3) / (e1 - e3) retval = (1 / sqrt(e1 - e3)) * ellipf(asin(sqrt((e1 - e3)/(P - e3))),m=m) elif Delta < 0: H2 = (sqrt((e2 - e3) * (e2 - e1))).real assert(H2 > 0) m = mpf(1) / mpf(2) - 3 * e2 / (4 * H2) retval = 1 / (2 * sqrt(H2)) * ellipf(acos((e2-P+H2)/(e2-P-H2)),m=m) else: g2, g3 = self.__invariants if g2 == 0 and g3 == 0: retval = 1 / sqrt(P) else: c = e1 / 2 retval = (1 / sqrt(3 * c)) * asin(sqrt((3 * c)/(P + c))) if self.__ng3: retval /= mpc(0,1) alpha, beta, _, _ = self.reduce_to_fpp(retval) T1, T2 = self.periods return T1 * alpha + T2 * beta
def error(coefs, progress=True):
(a, b, c) = coefs
xs = (x / mp.mpf(4096) for x in range(-4096, 4097))
err = max(fabs(acos(x) - f(x, a, b, c)) for x in xs)
if progress:
print('(a, b, c, d): ({}, {}, {}, {})'.format(a, b, c, d(a, b, c)))
print('evaluated error: ', err)
print()
return float(err)
def get_offset_five(positions_old, positions, ligand_length):
vec_a = (positions[ligand_length+(len(positions)-len(positions_old))+1]-positions[ligand_length+(len(positions)-len(positions_old))])
vec_b = (positions_old[ligand_length+1]-positions_old[ligand_length])
alpha = math.acos(sum([alem.value_in_unit(unit.angstroms)*blem.value_in_unit(unit.angstroms) for alem, blem in zip(vec_a,vec_b)])/(np.linalg.norm(vec_a.value_in_unit(unit.angstroms))*np.linalg.norm(vec_b.value_in_unit(unit.angstroms))))
alpha_t = 0.
#alpha_t = math.pi-113.3*math.pi/360.
d_alpha = alpha_t-alpha
axis = cross(vec_a.value_in_unit(unit.angstroms),vec_b.value_in_unit(unit.angstroms))/np.linalg.norm(cross(vec_a.value_in_unit(unit.angstroms),vec_b.value_in_unit(unit.angstroms)))
offset = positions_old[-1]-positions[len(positions_old)-1]
return d_alpha, axis, offset, vec_a, vec_b
def polar_cubic(a, q, r):
'''
The polar coordinate solution of the cubic function; for use when
Q^3+R^2 < 0
This version formulated to work with mpmath for arbitrary floating point
precision and numpy arrays.
'''
theta = mpmath.acos(r / numpy.power(mpf('-1') * numpy.power(q, mpf('3')), mpf('0.5')))
return mpmath.cos(theta / mpf('3')) * numpy.power(mpf('-1') * q, mpf('0.5')) * mpf('2') - a / mpf('3')
def equiv_cos(x, range1, range2, radians=None, degrees=None, accuracy=2):
mpmath.mp.dps = accuracy + 1
range1, range2 = TrigEquivAngle.deg_or_rad([range1, range2], degrees)
firstCosAngle = mpmath.acos(x)
secondCosAngle = 2 * mpmath.pi - firstCosAngle
angles = TrigEquivAngle.create_equiv_angle_list(
[firstCosAngle, secondCosAngle], range1, range2, 2 * mpmath.pi)
return (TrigEquivAngle.clean_angles_rad_deg(angles, radians, degrees,
accuracy))
def polar_cubic(a, q, r):
'''
The polar coordinate solution of the cubic function; for use when
Q^3+R^2 < 0
This version formulated to work with mpmath for arbitrary floating point
precision and numpy arrays.
'''
theta = mpmath.acos(r / numpy.power(mpf('-1') * numpy.power(q, mpf('3')), mpf('0.5')))
return mpmath.cos(theta / mpf('3')) * numpy.power(mpf('-1') * q, mpf('0.5')) * mpf('2') - a / mpf('3')
def obliquity(t):
from mpmath import acos, cos, sqrt
H = self.__H_time(t)
hs = self.__hs_time(t)
G = d_eval['G']
Gt = d_eval['\\tilde{G}']
Hts = d_eval['\\tilde{H}_\\ast']
Gxy = sqrt(G**2-H**2)
Gtxys = sqrt(Gt**2-(Hts-H)**2)
retval = (Gxy*Gtxys*cos(hs)+H*(Hts-H))/(G*Gt)
return acos(retval)
def q_eit_standing_wave(Delta, Deltac, Omega, g1d, periodLength, phaseShift):
if Delta == Deltac:
return 0
gprime = 1 - g1d
kd = pi / periodLength
Mcell = eye(2)
for i in range(periodLength):
OmegaAtThisSite = Omega * cos(kd * i + pi * phaseShift)
beta3 = (g1d * (Delta - Deltac)) / (
(-2.0j * Delta + gprime) *
(Delta - Deltac) + 2.0j * OmegaAtThisSite**2)
M3 = matrix([[1 - beta3, -beta3], [beta3, 1 + beta3]])
Mf = matrix([[exp(1j * kd), 0], [0, exp(-1j * kd)]])
Mcell = Mf * M3 * Mcell
ret = (1.0 / periodLength) * acos(-0.5 * (Mcell[0, 0] + Mcell[1, 1]))
return ret
def getCircleIntersectionTerm( radius1, radius2, separation ):
distance = fdiv( fadd( fsub( power( separation, 2 ), power( radius1, 2 ) ),
power( radius2, 2 ) ),
fmul( 2, separation ) )
#print( 'radius1', radius1 )
#print( 'radius2', radius2 )
#print( 'distance', distance )
#print( 'radius1 - distance', fsub( radius1, distance ) )
#print( 'radius1^2 - distance^2', fsub( power( radius1, 2 ), power( distance, 2 ) ) )
#print( )
if power( distance, 2 ) > power( radius1, 2 ):
return fmul( power( radius1, 2 ), fdiv( pi, 2 ) )
return fsub( fmul( power( radius1, 2 ), acos( fdiv( distance, radius1 ) ) ),
fmul( distance, sqrt( fsub( power( radius1, 2 ), power( distance, 2 ) ) ) ) )
def getCircleIntersectionTerm( radius1, radius2, separation ):
distance = fdiv( fadd( fsub( power( separation, 2 ), power( radius1, 2 ) ),
power( radius2, 2 ) ),
fmul( 2, separation ) )
#print( 'radius1', radius1 )
#print( 'radius2', radius2 )
#print( 'distance', distance )
#print( 'radius1 - distance', fsub( radius1, distance ) )
#print( 'radius1^2 - distance^2', fsub( power( radius1, 2 ), power( distance, 2 ) ) )
#print( )
if power( distance, 2 ) > power( radius1, 2 ):
return fmul( power( radius1, 2 ), fdiv( pi, 2 ) )
return fsub( fmul( power( radius1, 2 ), acos( fdiv( distance, radius1 ) ) ),
fmul( distance, sqrt( fsub( power( radius1, 2 ), power( distance, 2 ) ) ) ) )
def calc_theta(mino_t, ups_theta, qz0, zp, zm, En, aa):
"""
theta in terms of Mino time
Parameters:
mino_t (float): Mino time
ups_theta (float): Mino theta frequency
qz0 (float): inital polar phase
zp (float): polar root
zm (float): polar root
En (float): energy
aa (float): spin
Returns:
theta (float)
"""
eta = ups_theta * mino_t + qz0
return acos(calc_zq(eta, zp, zm, En, aa))
def subspace_angle_V_M_mp(mu, lam, dps=100):
r"""Multiprecision implementation computing the subspace angle between V(mu) and M(lam)
"""
n = len(mu)
lam = np.atleast_1d(lam)
m = len(lam)
with mp.workdps(dps):
mu = mp.matrix(mu)
lam = mp.matrix(lam)
# Construct the Cauchy mass matrix
#M = mp.zeros(n,n)
#for i,j in product(range(n), range(n)):
# M[i,j] = (mu[i] + mu[j].conjugate())**(-1)
#ewL, QL = mp.eighe(M)
ewL, QL = cauchy_eigen(mu, dps)
# Construct the right hand side Mhat matrix
Mhat = mp.zeros(2 * m, 2 * m)
for i, j in product(range(m), range(m)):
Mhat[i, j] = (-lam[i] - lam[j].conjugate())**(-1)
Mhat[i, m + j] = (-lam[i] - lam[j].conjugate())**(-2)
Mhat[m + i, j] = (-lam[i] - lam[j].conjugate())**(-2).conjugate()
Mhat[m + i, m + j] = 2 * (-lam[i] - lam[j].conjugate())**(-3)
# Construct the interior matrix
A = mp.zeros(n, 2 * m)
for i, j in product(range(n), range(m)):
A[i, j] = (mu[i] - lam[j])**(-1)
A[i, m + j] = (mu[i] - lam[j])**(-2)
ewR, QR = mp.eighe(Mhat)
AA = mp.diag([1 / mp.sqrt(ewL[i])
for i in range(n)]) * (QL.H * A * QR) * mp.diag(
[1 / mp.sqrt(ewR[i]) for i in range(2 * m)])
U, s, VH = mp.svd(AA)
phi = np.array([float(mp.acos(si)) for si in s])
return phi
def fpaa_oracle(qc, q, n, clauses, oracle, index):
theta = math.pi / clauses
delta = pow(2, -0.5 * pow(n, 2)) / 2
_lambda = pow(math.sin(theta), 2) / 4 + pow(1 / 2 - math.cos(theta) / 2, 2)
L = int(math.ceil(2 * math.log(2 / delta) / math.sqrt(_lambda)))
gamma = mpmath.cos(mpmath.acos(1 / delta) / L)
qc.barrier()
A_matrix(qc, q, n, clauses, oracle, theta)
qc.barrier()
for k in range(1, L):
alpha = abs(2 * mpmath.acot(
mpmath.tan(2 * math.pi *
(k) / L) * mpmath.sqrt(1 - 1 / pow(gamma, -2))))
beta = -abs(2 * mpmath.acot(
mpmath.tan(2 * math.pi *
(L -
(k - 1)) / L) * mpmath.sqrt(1 - 1 / pow(gamma, -2))))
qc.h(q[n])
U_matrix(qc, q, n, beta)
qc.h(q[n])
Adgr_matrix(qc, q, n, clauses, oracle, theta)
U_matrix(qc, q, n, alpha)
A_matrix(qc, q, n, clauses, oracle, theta)
qc.barrier()
qc.h(q[n])
qc.barrier()
qc.x(q[n])
qc.x(q[n + 1])
qc.h(q[n + 1])
qc.cx(q[n], q[n + 1])
qc.h(q[n + 1])
qc.x(q[n + 1])
qc.x(q[n])
def eq13(_P: float,
_r: float,
_a: float,
M: float,
incl: float,
n: int = 0,
tol=10e-6) -> float:
"""Relation between radius (where photon was emitted in accretion disk), a and P.
P can be converted to b, yielding the polar coordinates (b, a) on the photographic plate"""
zinf = zeta_inf(_P, M)
Qvar = Q(_P, M)
m_ = k2(
_P, M
) # modulus of the elliptic integrals. mpmath takes m = k² as argument.
ellinf = F(zinf, m_) # Elliptic integral F(zinf, k)
g = mpmath.acos(cos_gamma(_a, incl)) # real
# Calculate the argument of sn (mod is m = k², same as the original elliptic integral)
# WARNING: paper has an error here: \sqrt(P / Q) should be in denominator, not numerator
# There's no way that \gamma and \sqrt(P/Q) can end up on the same side of the division
if n: # higher order image
ellK = K(m_) # calculate complete elliptic integral of mod m = k²
ellips_arg = (g - 2. * n * np.pi) / (
2. * mpmath.sqrt(_P / Qvar)) - ellinf + 2. * ellK
else: # direct image
ellips_arg = g / (2. * mpmath.sqrt(_P / Qvar)) + ellinf # complex
# sn is an Jacobi elliptic function: elliptic sine. ellipfun() takes 'sn'
# as argument to specify "elliptic sine" and modulus m=k²
sn = mpmath.ellipfun('sn', ellips_arg, m=m_)
sn2 = sn * sn
# sn2 = float(sn2.real)
term1 = -(Qvar - _P + 2. * M) / (4. * M * _P)
term2 = ((Qvar - _P + 6. * M) / (4. * M * _P)) * sn2
s = 1. - _r * (term1 + term2) # solve this for zero
return s
def __set_params(self,d):
from copy import deepcopy
from mpmath import mpf, sqrt, polyroots, cos, acos, pi, mp
from weierstrass_elliptic import weierstrass_elliptic as we
names = ['m2','r2','rot2','r1','rot1','i_a','ht','a','e','i','h']
if not all([s in d for s in names]):
raise ValueError('invalid set of parameters')
# Convert all the values to mpf and introduce convenience shortcuts.
m2, r2, rot2, r1, rot1, i_a, ht_in, a, e, i, h_in = [mpf(d[s]) for s in names]
L_in = sqrt(self.__GG_val * m2 * a)
G_in = L_in * sqrt(1. - e**2)
H_in = G_in * cos(i)
Gt_in = (2 * r1**2 * rot1) / 5
Ht_in = Gt_in * cos(i_a)
Hts_in = H_in + Ht_in
hs_in = h_in - ht_in
Gxy_in = sqrt(G_in**2 - H_in**2)
Gtxys_in = sqrt(Gt_in**2 - Ht_in**2)
J2 = (2 * m2 * r2**2 * rot2) / 5
II_1 = mpf(5) / (2 * r1**2)
# Evaluation dictionary.
eval_names = ['L','G','H','\\tilde{G}','\\tilde{H}_\\ast','h_\\ast','\\tilde{G}_{xy\\ast}','m_2','\\mathcal{G}','J_2','G_{xy}',\
'\\varepsilon','\\mathcal{I}_1']
eval_values = [L_in,G_in,H_in,Gt_in,Hts_in,hs_in,Gtxys_in,m2,self.__GG_val,J2,Gxy_in,self.__eps_val,II_1]
d_eval = dict(zip(eval_names,eval_values))
# Evaluate Hamiltonian with initial conditions.
HHp_val = self.__HHp.trim().evaluate(d_eval)
# Add the value of the Hamiltonian to the eval dictionary.
d_eval['\\mathcal{H}^\\prime'] = HHp_val
# Evaluate g2 and g3.
g2_val, g3_val = self.__g2.trim().evaluate(d_eval), self.__g3.trim().evaluate(d_eval)
# Create the Weierstrass object.
wp = we(g2_val,g3_val)
# Store the period.
self.__wp_period = wp.periods[0]
# Now let's find the roots of the quartic polynomial.
# NOTE: in theory here we could use the exact solution for the quartic.
p4coeffs = [t[0] * t[1].trim().evaluate(d_eval) for t in zip([1,4,6,4,1],self.__f4_cf)]
p4roots, err = polyroots(p4coeffs,error = True, maxsteps = 1000)
# Find a reachable root.
Hr, H_max, n_lobes, lobe_idx = self.__reachable_root(p4roots,H_in)
# Determine t_r
t_r = self.__compute_t_r(n_lobes,lobe_idx,H_in,Hr,d_eval,p4roots,p4coeffs[0])
# Now evaluate the derivatives of the polynomial. We will need to replace H_in with Hr in the eval dict.
d_eval['H'] = Hr
_, f4Hp, f4Hpp, _, _ = self.__f4
f4p_eval = f4Hp.trim().evaluate(d_eval)
f4pp_eval = f4Hpp.trim().evaluate(d_eval)
# Build and store the expression for H(t).
self.__H_time = lambda t: Hr + f4p_eval / (4 * (wp.P(t - t_r) - f4pp_eval / 24))
# H will not be needed any more, replace with H_r
del d_eval['H']
d_eval['H_r'] = Hr
# Inject the invariants and the other two constants into the evaluation dictionary.
d_eval['g_2'] = g2_val
d_eval['g_3'] = g3_val
d_eval['A'] = f4p_eval / 4
d_eval['B'] = f4pp_eval / 24
# Verify the formulae in solutions.py
self.__verify_solutions(d_eval)
# Assuming g = 0 as initial angle.
self.__g_time = spin_gr_theory.__get_g_time(d_eval,t_r,0.)
self.__hs_time = spin_gr_theory.__get_hs_time(d_eval,t_r,hs_in)
self.__ht_time = spin_gr_theory.__get_ht_time(d_eval,t_r,ht_in)
def obliquity(t):
from mpmath import acos, cos, sqrt
H = self.__H_time(t)
hs = self.__hs_time(t)
G = d_eval['G']
Gt = d_eval['\\tilde{G}']
Hts = d_eval['\\tilde{H}_\\ast']
Gxy = sqrt(G**2-H**2)
Gtxys = sqrt(Gt**2-(Hts-H)**2)
retval = (Gxy*Gtxys*cos(hs)+H*(Hts-H))/(G*Gt)
return acos(retval)
self.__obliquity_time = obliquity
def spin_vector(t):
import numpy
ht = self.__ht_time(t)
H = self.__H_time(t)
G = d_eval['G']
Gt = d_eval['\\tilde{G}']
Hts = d_eval['\\tilde{H}_\\ast']
Gtxys = sqrt(Gt**2-(Hts-H)**2)
return numpy.array([x.real for x in [Gtxys*sin(ht),-Gtxys*cos(ht),Hts-H]])
self.__spin_vector_time = spin_vector
def orbit_vector(t):
import numpy
ht = self.__ht_time(t)
hs = self.__hs_time(t)
h = hs + ht
H = self.__H_time(t)
G = d_eval['G']
Gxy = sqrt(G**2-H**2)
return numpy.array([x.real for x in [Gxy*sin(h),-Gxy*cos(h),H]])
self.__orbit_vector_time = orbit_vector
# Store the params of the system.
self.__params = dict(zip(names,[mpf(d[s]) for s in names]))
# Final report.
rad_conv = 360 / (2 * pi())
print("\x1b[31mAccuracy in the identification of the poly roots:\x1b[0m")
print(err)
print("\n\x1b[31mPeriod (years):\x1b[0m")
print(wp.periods[0] / (3600*24*365))
print("\n\x1b[31mMin and max orbital inclination (deg):\x1b[0m")
print(acos(Hr/G_in) * rad_conv,acos(H_max/G_in) * rad_conv)
print("\n\x1b[31mMin and max axial inclination (deg):\x1b[0m")
print(acos((Hts_in - Hr)/Gt_in) * rad_conv,acos((Hts_in-H_max)/Gt_in) * rad_conv)
print("\n\x1b[31mNumber of lobes:\x1b[0m " + str(n_lobes))
print("\n\x1b[31mLobe idx:\x1b[0m " + str(lobe_idx))
# Report the known results for simplified system for comparison.
H = H_in
HHp,G,L,GG,eps,m2,Hts,Gt,J2 = [d_eval[s] for s in ['\\mathcal{H}^\\prime','G','L','\\mathcal{G}',\
'\\varepsilon','m_2','\\tilde{H}_\\ast','\\tilde{G}','J_2']]
print("\n\x1b[31mEinstein (g):\x1b[0m " + str((3 * eps * GG**4 * m2**4/(G**2*L**3))))
print("\n\x1b[31mLense-Thirring (g):\x1b[0m " + str(((eps * ((-6*H*J2*GG**4*m2**3)/(G**4*L**3)+3*GG**4*m2**4/(G**2*L**3))))))
print("\n\x1b[31mLense-Thirring (h):\x1b[0m " + str((2*eps*J2*GG**4*m2**3/(G**3*L**3))))
# These are the Delta_ constants of quasi-periodicity.
f_period = self.wp_period
print("\n\x1b[31mDelta_g:\x1b[0m " + str(self.g_time(f_period) - self.g_time(0)))
print("\n\x1b[31mg_rate:\x1b[0m " + str((self.g_time(f_period) - self.g_time(0))/f_period))
Delta_hs = self.hs_time(f_period) - self.hs_time(0)
print("\n\x1b[31mDelta_hs:\x1b[0m " + str(Delta_hs))
print("\n\x1b[31mhs_rate:\x1b[0m " + str(Delta_hs/f_period))
Delta_ht = self.ht_time(f_period) - self.ht_time(0)
print("\n\x1b[31mDelta_ht:\x1b[0m " + str(Delta_ht))
print("\n\x1b[31mht_rate:\x1b[0m " + str(Delta_ht/f_period))
print("\n\x1b[31mDelta_h:\x1b[0m " + str(Delta_ht+Delta_hs))
print("\n\x1b[31mh_rate:\x1b[0m " + str((Delta_ht+Delta_hs)/f_period))
print("\n\n")
def solveCubicPolynomial( a, b, c, d ):
if mp.dps < 50:
mp.dps = 50
if a == 0:
return solveQuadraticPolynomial( b, c, d )
f = fdiv( fsub( fdiv( fmul( 3, c ), a ), fdiv( power( b, 2 ), power( a, 2 ) ) ), 3 )
g = fdiv( fadd( fsub( fdiv( fmul( 2, power( b, 3 ) ), power( a, 3 ) ),
fdiv( fprod( [ 9, b, c ] ), power( a, 2 ) ) ),
fdiv( fmul( 27, d ), a ) ), 27 )
h = fadd( fdiv( power( g, 2 ), 4 ), fdiv( power( f, 3 ), 27 ) )
# all three roots are the same
if h == 0:
x1 = fneg( root( fdiv( d, a ), 3 ) )
x2 = x1
x3 = x2
# two imaginary and one real root
elif h > 0:
r = fadd( fneg( fdiv( g, 2 ) ), sqrt( h ) )
if r < 0:
s = fneg( root( fneg( r ), 3 ) )
else:
s = root( r, 3 )
t = fsub( fneg( fdiv( g, 2 ) ), sqrt( h ) )
if t < 0:
u = fneg( root( fneg( t ), 3 ) )
else:
u = root( t, 3 )
x1 = fsub( fadd( s, u ), fdiv( b, fmul( 3, a ) ) )
real = fsub( fdiv( fneg( fadd( s, u ) ), 2 ), fdiv( b, fmul( 3, a ) ) )
imaginary = fdiv( fmul( fsub( s, u ), sqrt( 3 ) ), 2 )
x2 = mpc( real, imaginary )
x3 = mpc( real, fneg( imaginary ) )
# all real roots
else:
j = sqrt( fsub( fdiv( power( g, 2 ), 4 ), h ) )
k = acos( fneg( fdiv( g, fmul( 2, j ) ) ) )
if j < 0:
l = fneg( root( fneg( j ), 3 ) )
else:
l = root( j, 3 )
m = cos( fdiv( k, 3 ) )
n = fmul( sqrt( 3 ), sin( fdiv( k, 3 ) ) )
p = fneg( fdiv( b, fmul( 3, a ) ) )
x1 = fsub( fmul( fmul( 2, l ), cos( fdiv( k, 3 ) ) ), fdiv( b, fmul( 3, a ) ) )
x2 = fadd( fmul( fneg( l ), fadd( m, n ) ), p )
x3 = fadd( fmul( fneg( l ), fsub( m, n ) ), p )
return [ chop( x1 ), chop( x2 ), chop( x3 ) ]
def eval(self, z):
return mpmath.acos(z)
def sarkar_embedding(tree, root, **kwargs):
'''
Embed a tree in the Poincare disc using Sarkar's algorithm
from "Low Distortion Delaunay Embedding of Trees in Hyperbolic Plane.
Args:
tree (networkx.Graph) : The tree represented with int node labels.
Weighted trees should have the edge attribute "weight"
root (int): The node to use as the root of the embedding
Keyword Args:
weighted (bool): True if the tree is weighted (default True)
tau (float): the scaling factor for distances.
By default it is calculated based on statistics of the tree.
epsilon (float): parameter >0 controlling distortion bound (default 0.1).
precision (int): number of bits of precision to use.
By default it is calculated based on tau and epsilon.
Returns:
size N x 2 mpmath.matrix containing the coordinates of embedded nodes
'''
eps = kwargs.get("epsilon",0.1)
weighted = kwargs.get("weighted", True)
tau = kwargs.get("tau")
max_deg = max(tree.degree)[1]
if tau is None:
tau = (1+eps)/eps * mpm.log(2*max_deg/ mpm.pi)
prc = kwargs.get("precision")
if prc is None:
prc = _embedding_precision(tree,root,eps)
mpm.mp.dps = prc
n = tree.order()
emb = mpm.zeros(n,2)
place = []
# place the children of root
for i, v in enumerate(tree[root]):
if weighted:
r = mpm.tanh( tau*tree[root][v]["weight"])
else:
r = mpm.tanh(tau)
theta = 2*i*mpm.pi / tree.degree[root]
emb[v,0] = r*mpm.cos(theta)
emb[v,1] = r*mpm.sin(theta)
place.append((root,v))
# TODO parallelize this
while place:
u, v = place.pop() # u is the parent of v
p, x = emb[u,:], emb[v,:]
rp = poincare_reflect0(x, p, precision=prc)
arg = mpm.acos(rp[0]/mpm.norm(rp))
if rp[1] < 0:
arg = 2*mpm.pi - arg
theta = 2*mpm.pi / tree.degree[v]
i=0
for w in tree[v]:
if w == u: continue
i+=1
if weighted:
r = mpm.tanh(tau*tree[v][w]["weight"])
else:
r = mpm.tanh(tau)
w_emb = r * mpm.matrix([mpm.cos(arg+theta*i),mpm.sin(arg+theta*i)]).T
w_emb = poincare_reflect0(x, w_emb, precision=prc)
emb[w,:] = w_emb
place.append((v,w))
return emb
def eval(self, z):
return mpmath.acos(z)
from units import *
from copy import copy
def sqrt(x):
if hasattr(x,'unit'):
return math.sqrt(x.number) | x.unit**0.5
return math.sqrt(x)
#trigonometric convenience functions which are "unit aware"
sin=lambda x: math.sin(1.*x)
cos=lambda x: math.cos(1.*x)
tan=lambda x: math.tan(1.*x)
cot=lambda x: math.cot(1.*x)
asin=lambda x: math.asin(x) | rad
acos=lambda x: math.acos(x) | rad
atan=lambda x: math.atan(x) | rad
atan2=lambda x,y: math.atan2(x,y) | rad
#~ cos=math.cos
#~ sin=math.sin
#~ tan=math.tan
#~ cosh=math.cosh
#~ sinh=math.sinh
#~ tanh=math.tanh
#~ acos=math.acos
#~ asin=math.asin
#~ atan=math.atan
acosh=math.acosh
asinh=math.asinh
atanh=math.atanh
def fermat_length(a,x):
F = mp.ellipf(mp.acos((0.5-x) / (0.5+x)), 0.5)
return a*(F + sqrt(2*x*(4*x**2+1))) / sqrt(18)
def vector_angle(vec1, vec2):
abs_vec1 = absolute(vec1)
abs_vec2 = absolute(vec2)
prod_12 = sum([alem*blem for alem,blem in zip(vec1, vec2)])
return math.acos(prod_12/(abs_vec1*abs_vec2))
def solveCubicPolynomial( a, b, c, d ):
# pylint: disable=invalid-name
'''
This function applies the cubic formula to solve a polynomial
with coefficients of a, b, c and d.
'''
if mp.dps < 50:
mp.dps = 50
if a == 0:
return solveQuadraticPolynomial( b, c, d )
f = fdiv( fsub( fdiv( fmul( 3, c ), a ), fdiv( power( b, 2 ), power( a, 2 ) ) ), 3 )
g = fdiv( fadd( fsub( fdiv( fmul( 2, power( b, 3 ) ), power( a, 3 ) ),
fdiv( fprod( [ 9, b, c ] ), power( a, 2 ) ) ),
fdiv( fmul( 27, d ), a ) ), 27 )
h = fadd( fdiv( power( g, 2 ), 4 ), fdiv( power( f, 3 ), 27 ) )
# all three roots are the same
if h == 0:
x1 = fneg( root( fdiv( d, a ), 3 ) )
x2 = x1
x3 = x2
# two imaginary and one real root
elif h > 0:
r = fadd( fneg( fdiv( g, 2 ) ), sqrt( h ) )
if r < 0:
s = fneg( root( fneg( r ), 3 ) )
else:
s = root( r, 3 )
t = fsub( fneg( fdiv( g, 2 ) ), sqrt( h ) )
if t < 0:
u = fneg( root( fneg( t ), 3 ) )
else:
u = root( t, 3 )
x1 = fsub( fadd( s, u ), fdiv( b, fmul( 3, a ) ) )
real = fsub( fdiv( fneg( fadd( s, u ) ), 2 ), fdiv( b, fmul( 3, a ) ) )
imaginary = fdiv( fmul( fsub( s, u ), sqrt( 3 ) ), 2 )
x2 = mpc( real, imaginary )
x3 = mpc( real, fneg( imaginary ) )
# all real roots
else:
j = sqrt( fsub( fdiv( power( g, 2 ), 4 ), h ) )
k = acos( fneg( fdiv( g, fmul( 2, j ) ) ) )
if j < 0:
l = fneg( root( fneg( j ), 3 ) )
else:
l = root( j, 3 )
m = cos( fdiv( k, 3 ) )
n = fmul( sqrt( 3 ), sin( fdiv( k, 3 ) ) )
p = fneg( fdiv( b, fmul( 3, a ) ) )
x1 = fsub( fmul( fmul( 2, l ), cos( fdiv( k, 3 ) ) ), fdiv( b, fmul( 3, a ) ) )
x2 = fadd( fmul( fneg( l ), fadd( m, n ) ), p )
x3 = fadd( fmul( fneg( l ), fsub( m, n ) ), p )
return [ chop( x1 ), chop( x2 ), chop( x3 ) ]
'root': ['primitive', [lambda x, y: mp.root(x, y[0]), None]], # y's root
'unitroots': ['primitive', [lambda x, y: Vector(mp.unitroots(x)),
None]], #
'hypot': ['primitive', [lambda x, y: mp.hypot(x, y[0]),
None]], # sqrt(x**2+y**2)
#
'sin': ['primitive', [lambda x, y: mp.sin(x), None]],
'cos': ['primitive', [lambda x, y: mp.cos(x), None]],
'tan': ['primitive', [lambda x, y: mp.tan(x), None]],
'sinpi': ['primitive', [lambda x, y: mp.sinpi(x), None]], #sin(x * pi)
'cospi': ['primitive', [lambda x, y: mp.cospi(x), None]],
'sec': ['primitive', [lambda x, y: mp.sec(x), None]],
'csc': ['primitive', [lambda x, y: mp.csc(x), None]],
'cot': ['primitive', [lambda x, y: mp.cot(x), None]],
'asin': ['primitive', [lambda x, y: mp.asin(x), None]],
'acos': ['primitive', [lambda x, y: mp.acos(x), None]],
'atan': ['primitive', [lambda x, y: mp.atan(x), None]],
'atan2': ['primitive', [lambda x, y: mp.atan2(y[0], x), None]],
'asec': ['primitive', [lambda x, y: mp.asec(x), None]],
'acsc': ['primitive', [lambda x, y: mp.acsc(x), None]],
'acot': ['primitive', [lambda x, y: mp.acot(x), None]],
'sinc': ['primitive', [lambda x, y: mp.sinc(x), None]],
'sincpi': ['primitive', [lambda x, y: mp.sincpi(x), None]],
'degrees': ['primitive', [lambda x, y: mp.degrees(x),
None]], #radian - >degree
'radians': ['primitive', [lambda x, y: mp.radians(x),
None]], #degree - >radian
#
'exp': ['primitive', [lambda x, y: mp.exp(x), None]],
'expj': ['primitive', [lambda x, y: mp.expj(x), None]], #exp(x*i)
'expjpi': ['primitive', [lambda x, y: mp.expjpi(x), None]], #exp(x*i*pi)
def arccos_degrees(x):
"""Return arccosine of x in degrees."""
return normalized_degrees_from_radians(acos(x))
def acos(op):
expr = mpmath.acos(op)
return convertFromRadians(expr)
def move(self, alpha, v, t):
if alpha == 0:
self.x1 += v * t
self.x2 += v * t
return
reverse_alpha = False
reverse_v = False
alpha = mpmath.radians(alpha)
if alpha < 0:
alpha = -alpha
reverse_alpha = True
if v < 0:
v = -v
reverse_v = True
R = self.l * mpmath.cot(alpha) + 0.5 * self.d # outer radius
r = self.l * mpmath.cot(alpha) - 0.5 * self.d # inner radius
w = v / R # angular velocity
beta = w * t # angle that has been turned after the move viewed from the center of the circle
assert (beta < mpmath.pi) # make sure it still forms a triangle
theta = 0.5 * beta # the angle of deviation from the original orientation
m = 2 * R * mpmath.sin(theta) # displacement of outer rear wheel
n = 2 * r * mpmath.sin(theta) # displacement of inner rear wheel
if not reverse_alpha and not reverse_v:
delta_x1, delta_y1 = mpmath.cos(theta) * m, mpmath.sin(theta) * m
delta_x2, delta_y2 = mpmath.cos(theta) * n, mpmath.sin(theta) * n
elif reverse_alpha and not reverse_v:
delta_x2, delta_y2 = mpmath.cos(theta) * m, -mpmath.sin(theta) * m
delta_x1, delta_y1 = mpmath.cos(theta) * n, -mpmath.sin(theta) * n
elif not reverse_alpha and reverse_v:
delta_x1, delta_y1 = -mpmath.cos(theta) * m, mpmath.sin(theta) * m
delta_x2, delta_y2 = -mpmath.cos(theta) * n, mpmath.sin(theta) * n
else:
delta_x2, delta_y2 = -mpmath.cos(theta) * m, -mpmath.sin(theta) * m
delta_x1, delta_y1 = -mpmath.cos(theta) * n, -mpmath.sin(theta) * n
delta_x1 = float(delta_x1)
delta_y1 = float(delta_y1)
delta_x2 = float(delta_x2)
delta_y2 = float(delta_y2)
# the current calculation is based on this relative reference system
# we need to map this coordinate in the relative reference system back to the absolute system
# use the dot product of the rear wheel line to find the rotation from the relative reference system to the absolute system
if self.y1 != 0 or self.y2 != 10: # no rotation is needed
bottom = np.sqrt(((self.x2 - self.x1) * (self.x2 - self.x1) +
(self.y2 - self.y1) * (self.y2 - self.y1))) * 10
top = (self.y2 - self.y1) * 10
cosine_value = float(top / bottom)
rotation = mpmath.acos(cosine_value)
# print(rotation)
if self.x1 < self.x2: # since arccos does not give direction, we need to do a check here
rotation = -rotation
# let A be the linear transformation that maps a relative referenced coordinate to an absolute referenced coordinate
A = np.asarray(
[[float(mpmath.cos(rotation)),
float(-mpmath.sin(rotation))],
[float(mpmath.sin(rotation)),
float(mpmath.cos(rotation))]])
# then we map delta_1 and delta_2 to the absolute reference system
relative_delta_1 = np.asarray([delta_x1, delta_y1])
relative_delta_2 = np.asarray([delta_x2, delta_y2])
absolute_delta_1 = np.matmul(A, relative_delta_1)
absolute_delta_2 = np.matmul(A, relative_delta_2)
delta_x1 = absolute_delta_1[0]
delta_y1 = absolute_delta_1[1]
delta_x2 = absolute_delta_2[0]
delta_y2 = absolute_delta_2[1]
# make vector addition in the absolute reference system
self.x1 += delta_x1
self.x2 += delta_x2
self.y1 += delta_y1
self.y2 += delta_y2
dist = mpmath.sqrt((self.x1 - self.x2) * (self.x1 - self.x2) +
(self.y2 - self.y1) * (self.y2 - self.y1))
assert abs(dist - self.d) <= self.d * 1e-4
def alpha(phi: float, incl: float):
"""Returns observer coordinate of photon given phi (BHF) and inclination (BHF)"""
return mpmath.acos(cosAlpha(phi, incl))