def testAll(argv=None):
if argv is None:
argv = sys.argv
if len(argv)==1:
print("\nNo options specified! Run this file using\n" + \
" nC.sh -python %s [-neuron|-genesis]\n"%argv[0])
quit()
if '-neuron' in argv:
simulators.append('NEURON')
if '-genesis' in argv:
simulators.append('GENESIS_SI')
if '-neuroml2' in argv:
# Not yet working...
nc.generateNeuroML2(projFile, simConfigs)
if len(simulators)>0:
print "Loading project from "+ projFile.getCanonicalPath()
simManager = nc.SimulationManager(projFile,
numConcurrentSims = numConcurrentSims,
verbose = verbose)
simManager.runMultipleSims(simConfigs = simConfigs,
simDt = simDt,
simulators = simulators,
runInBackground = runInBackground,
varTimestepNeuron = varTimestepNeuron,
varTimestepTolerance = varTimestepTolerance)
print("\nSimulation(s) set running. Check the ../simulations directory for output.\n")
quit()
import os
try:
from java.io import File
except ImportError:
print "Note: this file should be run using ..\\..\\..\\nC.bat -python XXX.py' or '../../../nC.sh -python XXX.py'"
print "See http://www.neuroconstruct.org/docs/python.html for more details"
quit()
sys.path.append(os.environ["NC_HOME"]+"/pythonNeuroML/nCUtils")
import ncutils as nc # Many useful functions such as SimManager.runMultipleSims found here
projFile = File(os.getcwd(), "../Ex8_PyNNDemo.ncx")
simConfigs = []
simConfigs.append("TestPyNN_NML2")
nc.generateNeuroML2(projFile, simConfigs)
extra_files = []
if len(sys.argv)==2 and sys.argv[1] == "-f":
extra_files.append('Ex8_PyNNDemo.net.nml')
extra_files.append('LEMS_Ex8_PyNNDemo.xml')
from subprocess import call
for f in extra_files:
call(["git", "checkout", "../generatedNeuroML2/%s"%f])
quit()
print "Note: this file should be run using 'nC.bat -python XXX.py' or 'nC.sh -python XXX.py'"
print "which use Jython (and so can access the Java classes in nC), as opposed to standard C based Python"
print "See http://www.neuroconstruct.org/docs/python.html for more details"
quit()
sys.path.append(os.environ["NC_HOME"]+"/pythonNeuroML/nCUtils")
import ncutils as nc # Many useful functions such as SimManager.runMultipleSims found here
projFile = File(os.getcwd(), "../SolinasEtAl-GolgiCell.ncx")
print("Generating NeuroML v1.8.1 files...")
nc.generateNeuroML1(projFile, ['Fig. 2A: Pacemaking'])
print("Generating NeuroML v2 files...")
nc.generateNeuroML2(projFile, ['Fig. 2A: Pacemaking'])
# Some extra files have been committed for testing or to provide other LEMS/NeuroML 2 examples
# This just pulls them from the repository, since they get wiped by the generateNeuroML2 function
extra_files = ['.test.*', 'channel_summary', 'analyse_chans.sh', 'compare_nml2_mods.py', '../generatedNeuroML/.test.validate.omt']
if len(sys.argv)==2 and sys.argv[1] == "-f":
extra_files.append('SolinasEtAl-GolgiCell.net.nml')
from subprocess import call
for f in extra_files:
call(["git", "checkout", "../generatedNeuroML2/%s"%f])
quit()
