def testAll(argv=None): if argv is None: argv = sys.argv if len(argv)==1: print("\nNo options specified! Run this file using\n" + \ " nC.sh -python %s [-neuron|-genesis]\n"%argv[0]) quit() if '-neuron' in argv: simulators.append('NEURON') if '-genesis' in argv: simulators.append('GENESIS_SI') if '-neuroml2' in argv: # Not yet working... nc.generateNeuroML2(projFile, simConfigs) if len(simulators)>0: print "Loading project from "+ projFile.getCanonicalPath() simManager = nc.SimulationManager(projFile, numConcurrentSims = numConcurrentSims, verbose = verbose) simManager.runMultipleSims(simConfigs = simConfigs, simDt = simDt, simulators = simulators, runInBackground = runInBackground, varTimestepNeuron = varTimestepNeuron, varTimestepTolerance = varTimestepTolerance) print("\nSimulation(s) set running. Check the ../simulations directory for output.\n") quit()
import os try: from java.io import File except ImportError: print "Note: this file should be run using ..\\..\\..\\nC.bat -python XXX.py' or '../../../nC.sh -python XXX.py'" print "See http://www.neuroconstruct.org/docs/python.html for more details" quit() sys.path.append(os.environ["NC_HOME"]+"/pythonNeuroML/nCUtils") import ncutils as nc # Many useful functions such as SimManager.runMultipleSims found here projFile = File(os.getcwd(), "../Ex8_PyNNDemo.ncx") simConfigs = [] simConfigs.append("TestPyNN_NML2") nc.generateNeuroML2(projFile, simConfigs) extra_files = [] if len(sys.argv)==2 and sys.argv[1] == "-f": extra_files.append('Ex8_PyNNDemo.net.nml') extra_files.append('LEMS_Ex8_PyNNDemo.xml') from subprocess import call for f in extra_files: call(["git", "checkout", "../generatedNeuroML2/%s"%f]) quit()
print "Note: this file should be run using 'nC.bat -python XXX.py' or 'nC.sh -python XXX.py'" print "which use Jython (and so can access the Java classes in nC), as opposed to standard C based Python" print "See http://www.neuroconstruct.org/docs/python.html for more details" quit() sys.path.append(os.environ["NC_HOME"]+"/pythonNeuroML/nCUtils") import ncutils as nc # Many useful functions such as SimManager.runMultipleSims found here projFile = File(os.getcwd(), "../SolinasEtAl-GolgiCell.ncx") print("Generating NeuroML v1.8.1 files...") nc.generateNeuroML1(projFile, ['Fig. 2A: Pacemaking']) print("Generating NeuroML v2 files...") nc.generateNeuroML2(projFile, ['Fig. 2A: Pacemaking']) # Some extra files have been committed for testing or to provide other LEMS/NeuroML 2 examples # This just pulls them from the repository, since they get wiped by the generateNeuroML2 function extra_files = ['.test.*', 'channel_summary', 'analyse_chans.sh', 'compare_nml2_mods.py', '../generatedNeuroML/.test.validate.omt'] if len(sys.argv)==2 and sys.argv[1] == "-f": extra_files.append('SolinasEtAl-GolgiCell.net.nml') from subprocess import call for f in extra_files: call(["git", "checkout", "../generatedNeuroML2/%s"%f]) quit()