Python has_all_finite_radius_neurites Examples

Example #1

File: test_structural_checks.py Project: juanchopanza/NeuroM

    def test_has_finite_radius_neurites_good_data(self):
        files = [os.path.join(SWC_PATH, f)
                 for f in ['Neuron.swc',
                           'Single_apical.swc',
                           'Single_basal.swc',
                           'Single_axon.swc']]

        files.append(os.path.join(H5V1_PATH, 'Neuron_2_branch.h5'))

        for f in files:
            ok = chk.has_all_finite_radius_neurites(self.load_data(f))
            nt.ok_(ok)
            nt.ok_(len(ok.info) == 0)

Example #2

File: test_structural_checks.py Project: joewgraham/NeuroM

    def test_has_finite_radius_neurites_good_data(self):
        files = [Path(SWC_PATH, f)
                 for f in ['Neuron.swc',
                           'Single_apical.swc',
                           'Single_basal.swc',
                           'Single_axon.swc']]

        files.append(Path(H5V1_PATH, 'Neuron_2_branch.h5'))

        for f in files:
            ok = chk.has_all_finite_radius_neurites(self.load_data(f))
            nt.ok_(ok)
            nt.ok_(len(ok.info) == 0)

Example #3

File: test_structural_checks.py Project: juanchopanza/NeuroM

 def test_has_finite_radius_neurites_bad_data(self):
     f = os.path.join(SWC_PATH, 'Neuron_zero_radius.swc')
     ok = chk.has_all_finite_radius_neurites(self.load_data(f))
     nt.ok_(not ok)
     nt.ok_(ok.info == [194, 210, 246, 304, 493])

Example #4

File: benchmarks.py Project: BlueBrain/NeuroM

 def time_has_all_finite_radius_neurites(self):
     sc.has_all_finite_radius_neurites(self.data_wrapper, threshold=0.0)

Example #5

File: benchmarks.py Project: yamagatm/NeuroM

 def time_has_all_finite_radius_neurites(self):
     sc.has_all_finite_radius_neurites(self.data_wrapper, threshold=0.0)

Example #6

 def test_has_finite_radius_neurites_bad_data(self):
     f = Path(SWC_PATH, 'Neuron_zero_radius.swc')
     ok = chk.has_all_finite_radius_neurites(self.load_data(f))
     nt.ok_(not ok)
     nt.ok_(list(ok.info) == [194, 210, 246, 304, 493])