def test_has_finite_radius_neurites_good_data(self): files = [os.path.join(SWC_PATH, f) for f in ['Neuron.swc', 'Single_apical.swc', 'Single_basal.swc', 'Single_axon.swc']] files.append(os.path.join(H5V1_PATH, 'Neuron_2_branch.h5')) for f in files: ok = chk.has_all_finite_radius_neurites(self.load_data(f)) nt.ok_(ok) nt.ok_(len(ok.info) == 0)
def test_has_finite_radius_neurites_good_data(self): files = [Path(SWC_PATH, f) for f in ['Neuron.swc', 'Single_apical.swc', 'Single_basal.swc', 'Single_axon.swc']] files.append(Path(H5V1_PATH, 'Neuron_2_branch.h5')) for f in files: ok = chk.has_all_finite_radius_neurites(self.load_data(f)) nt.ok_(ok) nt.ok_(len(ok.info) == 0)
def test_has_finite_radius_neurites_bad_data(self): f = os.path.join(SWC_PATH, 'Neuron_zero_radius.swc') ok = chk.has_all_finite_radius_neurites(self.load_data(f)) nt.ok_(not ok) nt.ok_(ok.info == [194, 210, 246, 304, 493])
def time_has_all_finite_radius_neurites(self): sc.has_all_finite_radius_neurites(self.data_wrapper, threshold=0.0)
def time_has_all_finite_radius_neurites(self): sc.has_all_finite_radius_neurites(self.data_wrapper, threshold=0.0)
def test_has_finite_radius_neurites_bad_data(self): f = Path(SWC_PATH, 'Neuron_zero_radius.swc') ok = chk.has_all_finite_radius_neurites(self.load_data(f)) nt.ok_(not ok) nt.ok_(list(ok.info) == [194, 210, 246, 304, 493])