def process_events() :
_lock.acquire()
try:
h.doNotify()
except:
print ("Exception in gui thread")
_lock.release()
def process_events() :
_lock.acquire()
try:
h.doNotify()
except:
print ("Exception in gui thread")
_lock.release()
def mkswc(swc_contents):
f = open("temp.tmp", "w")
f.write(swc_contents)
f.close()
swc = h.Import3d_SWC_read()
swc.input("temp.tmp")
ig = h.Import3d_GUI(swc)
ig.box.unmap()
h.doNotify()
ig.box.map("Import3d", 650, 200, -1, -1)
h.doNotify()
ig.instantiate(None)
print (swc_contents)
h.topology()
print (secinfo())
print ("\n\n\n")
return ig
def process_events() : #h.doEvents() h.doNotify()
def process_events():
try:
h.doNotify()
except:
print("Exception in gui thread")
def process_events():
#h.doEvents()
h.doNotify()
with open(filename) as f:
for line in f:
line = line.strip()
if line == '0 setlinewidth':
line = '5 setlinewidth'
lines.append(line)
# now rewrite the file with the thicker linewidth
with open(filename, 'w') as f:
for line in lines:
f.write(line + '\n')
# now convert it to a png
png_filename = 'images/image%04d.png' % image_count
image_count += 1
os.system('convert %s -crop 558x660+0+0 %s' % (filename, png_filename))
# stop time
stop_time = 100
advance_count = 0
while h.t < stop_time:
h.fadvance()
h.doNotify()
if advance_count % save_every == 0:
savefig()
advance_count += 1
print h.t
# convert the pictures to a video
os.system('rm -f movie.mp4')
os.system('avconv -qscale 5 -r 20 -b 9600 -i images/image%04d.png movie.mp4')
def f():
#h.doEvents()
h.doNotify()
