Example #1
0
 def setUpClass(cls):
     cls.tmp_dir = tempfile.mkdtemp()
     cls.database_path = os.path.join(cls.tmp_dir, "temporary_database")
     cls.session = sql_db.get_db_session(database_path=cls.database_path)
     cls.project_name = "Y.Mom_14_01"
     cls.project_id = "P123"
     cls.sample_id = "{}_456".format(cls.project_id)
     cls.libprep_id = "A"
     cls.seqrun_id = gtd.generate_run_id()
     cls.engine = "piper_ngi"
 def setUpClass(cls):
     cls.tmp_dir = tempfile.mkdtemp()
     cls.database_path = os.path.join(cls.tmp_dir, "temporary_database")
     cls.session = sql_db.get_db_session(database_path=cls.database_path)
     cls.project_name = "Y.Mom_14_01"
     cls.project_id = "P123"
     cls.sample_id = "{}_456".format(cls.project_id)
     cls.libprep_id = "A"
     cls.seqrun_id = gtd.generate_run_id()
     cls.engine = "piper_ngi"
Example #3
0
 def setUpClass(cls):
     cls.session = CharonSession()
     # Project
     cls.p_id = "P100000"
     cls.p_name = "Y.Mom_14_01"
     cls.p_bp = tempfile.mkdtemp()
     # Sample
     cls.s_id = "{}_101".format(cls.p_id)
     # Libprep
     cls.l_id = "A"
     # Seqrun
     cls.sr_id = generate_run_id()
 def setUpClass(cls):
     cls.session = CharonSession()
     # Project
     cls.p_id = "P100000"
     cls.p_name = "Y.Mom_14_01"
     cls.p_bp = tempfile.mkdtemp()
     # Sample
     cls.s_id = "{}_101".format(cls.p_id)
     # Libprep
     cls.l_id = "A"
     # Seqrun
     cls.sr_id = generate_run_id()
Example #5
0
 def setUpClass(cls):
     cls.session = CharonSession()
     # Project
     cls.p_id = "P100000"
     cls.p_name = "Y.Mom_14_01"
     # Sample
     cls.s_id = "{}_101".format(cls.p_id)
     # Libprep
     cls.l_id = "A"
     # Seqrun
     cls.sr_id = generate_run_id()
     cls.sr_total_reads = 1000000
     cls.sr_mac = 30
Example #6
0
 def setUpClass(cls):
     cls.session = CharonSession()
     # Project
     cls.p_id = "P100000"
     cls.p_name = "Y.Mom_14_01"
     # Sample
     cls.s_id = "{}_101".format(cls.p_id)
     # Libprep
     cls.l_id = "A"
     # Seqrun
     cls.sr_id = generate_run_id()
     cls.sr_total_reads = 1000000
     cls.sr_mac = 30