def setUpClass(cls): cls.tmp_dir = tempfile.mkdtemp() cls.database_path = os.path.join(cls.tmp_dir, "temporary_database") cls.session = sql_db.get_db_session(database_path=cls.database_path) cls.project_name = "Y.Mom_14_01" cls.project_id = "P123" cls.sample_id = "{}_456".format(cls.project_id) cls.libprep_id = "A" cls.seqrun_id = gtd.generate_run_id() cls.engine = "piper_ngi"
def setUpClass(cls): cls.session = CharonSession() # Project cls.p_id = "P100000" cls.p_name = "Y.Mom_14_01" cls.p_bp = tempfile.mkdtemp() # Sample cls.s_id = "{}_101".format(cls.p_id) # Libprep cls.l_id = "A" # Seqrun cls.sr_id = generate_run_id()
def setUpClass(cls): cls.session = CharonSession() # Project cls.p_id = "P100000" cls.p_name = "Y.Mom_14_01" # Sample cls.s_id = "{}_101".format(cls.p_id) # Libprep cls.l_id = "A" # Seqrun cls.sr_id = generate_run_id() cls.sr_total_reads = 1000000 cls.sr_mac = 30