Example #1
0
    INPUT_PATH,
    smoothing_fwhm=None,
    logger=logger)

original_masker = global_masker_50
new_masker = global_masker_95
original_masker.set_params(detrend=False, standardize=False)
new_masker.set_params(detrend=False, standardize=False)

params = global_masker_95.get_params()
new_img = new_img_like(
    global_masker_95.mask_img,
    scipy.ndimage.binary_dilation(global_masker_95.mask_img.get_data()))
dilated_global_masker_95 = NiftiMasker()
dilated_global_masker_95.set_params(**params)
dilated_global_masker_95.mask_img = new_img
dilated_global_masker_95.fit()

atlas_maps, labels = reporting.load_atlas()
subject_names_list = [
    utils.get_subject_name(sub_id)
    for sub_id in utils.possible_subjects_id(language)
]
subject_ids_list = utils.possible_subjects_id(language)


def dilate_img(img):
    if type(img) == str:
        img = nib.load(img)
    data = img.get_data()
    new_data = dilate_data(data)