def filedb_test(self):
from nosebase import TempDir
tmp = TempDir()
filename = tmp.subfile('nlmsa')
self.db.write_binaries(filename)
fdb=cnestedlist.IntervalFileDB(filename)
assert fdb.find_overlap_list(0,10) == \
[(0, 10, 1, -110, -100), (5, 20, 2, -315, -300)]
assert fdb.find_overlap_list(-11,-7) == \
[(-10, 0, 1, 100, 110), (-20, -5, 2, 300, 315)]
tmp.__del__() # FORCE IT TO DELETE TEMPORARY DIRECTORY
def setup(self):
from nosebase import TempDir
tmp = TempDir()
self.datagraph = mapping.Graph(filename=tmp.subfile('mygraph'),
intKeys=True)
self.tempdir = tmp # KEEP BOUND SO NOT DELETED UNTIL THIS TEST COMPLETED