def test_marshal_plates_runs(self, plates_runs):
plate_a, plate_b, plate_c, plate_d = plates_runs
perms_css = 'canEdit canAnnotate canLink canDelete isOwned canChgrp'
expected = list()
# The underlying query explicitly orders the Plates by name.
for plate in sorted(plates_runs, cmp_name_insensitive):
plate_id = plate.id.val
expected.append({
'id': plate_id,
'name': plate.name.val,
'plateAcquisitions': list(),
'plateAcquisitionCount': 2,
'permsCss': perms_css
})
# The underlying query explicitly orders the PlateAcquisitions
# by id.
plate_acquisitions = \
sorted(plate.copyPlateAcquisitions(), cmp_id)
for plate_acquisition in plate_acquisitions:
expected[-1]['plateAcquisitions'].append({
'id': plate_acquisition.id.val,
'name': 'Run %d' % plate_acquisition.id.val,
'permsCss': perms_css
})
marshaled = marshal_plates(self.conn, self.conn.getUserId())
assert marshaled == expected
def test_marshal_plates_runs(self, conn, plates_runs):
plate_a, plate_b, plate_c, plate_d = plates_runs
perms_css = 'canEdit canAnnotate canLink canDelete canChgrp'
expected = list()
# The underlying query explicitly orders the Plates by name.
for plate in sorted(plates_runs, cmp_name_insensitive):
plate_id = plate.id.val
expected.append({
'id': plate_id,
'isOwned': True,
'name': plate.name.val,
'plateAcquisitions': list(),
'plateAcquisitionCount': 2,
'permsCss': perms_css
})
# The underlying query explicitly orders the PlateAcquisitions
# by id.
plate_acquisitions = \
sorted(plate.copyPlateAcquisitions(), cmp_id)
for plate_acquisition in plate_acquisitions:
expected[-1]['plateAcquisitions'].append({
'id':
plate_acquisition.id.val,
'name':
'Run %d' % plate_acquisition.id.val,
'isOwned':
True,
'permsCss':
perms_css
})
marshaled = marshal_plates(conn, conn.getUserId())
assert marshaled == expected
def test_marshal_plate_run(self, conn, plate_run):
plate_id = plate_run.id.val
plate_acquisition, = plate_run.copyPlateAcquisitions()
perms_css = 'canEdit canAnnotate canLink canDelete canChgrp'
expected = [{
'id':
plate_id,
'isOwned':
True,
'name':
plate_run.name.val,
'plateAcquisitions': [{
'id': plate_acquisition.id.val,
'name': 'Run %d' % plate_acquisition.id.val,
'isOwned': True,
'permsCss': perms_css
}],
'plateAcquisitionCount':
1,
'permsCss':
perms_css
}]
marshaled = marshal_plates(conn, conn.getUserId())
assert marshaled == expected
def test_marshal_plate(self, plate):
plate_id = plate.id.val
perms_css = 'canEdit canAnnotate canLink canDelete isOwned canChgrp'
expected = [{
'id': plate_id,
'name': plate.name.val,
'plateAcquisitions': list(),
'plateAcquisitionCount': 0,
'permsCss': perms_css
}]
marshaled = marshal_plates(self.conn, self.conn.getUserId())
assert marshaled == expected
def test_marshal_plate(self, conn, plate):
plate_id = plate.id.val
perms_css = 'canEdit canAnnotate canLink canDelete canChgrp'
expected = [{
'id': plate_id,
'isOwned': True,
'name': plate.name.val,
'plateAcquisitions': list(),
'plateAcquisitionCount': 0,
'permsCss': perms_css
}]
marshaled = marshal_plates(conn, conn.getUserId())
assert marshaled == expected
def test_marshal_plate_run(self, plate_run):
plate_id = plate_run.id.val
plate_acquisition, = plate_run.copyPlateAcquisitions()
perms_css = 'canEdit canAnnotate canLink canDelete isOwned canChgrp'
expected = [{
'id': plate_id,
'name': plate_run.name.val,
'plateAcquisitions': [{
'id': plate_acquisition.id.val,
'name': 'Run %d' % plate_acquisition.id.val,
'permsCss': perms_css
}],
'plateAcquisitionCount': 1,
'permsCss': perms_css
}]
marshaled = marshal_plates(self.conn, self.conn.getUserId())
assert marshaled == expected
def test_marshal_plates_different_users_as_other_user(
self, plates_different_users):
plate_a, plate_b = plates_different_users
expected = list()
perms_css = ''
# The underlying query explicitly orders the Plates list by
# case-insensitive name.
for plate in sorted(plates_different_users, cmp_name_insensitive):
expected.append({
'id': plate.id.val,
'name': plate.name.val,
'plateAcquisitions': list(),
'plateAcquisitionCount': 0,
'permsCss': perms_css,
})
self.conn.SERVICE_OPTS.setOmeroGroup(plate_a.details.group.id.val)
marshaled = marshal_plates(self.conn, None)
assert marshaled == expected
def test_marshal_plates_different_users_as_other_user(
self, conn, plates_different_users):
plate_a, plate_b = plates_different_users
expected = list()
perms_css = ''
# The underlying query explicitly orders the Plates list by
# case-insensitive name.
for plate in sorted(plates_different_users, cmp_name_insensitive):
expected.append({
'id': plate.id.val,
'isOwned': False,
'name': plate.name.val,
'plateAcquisitions': list(),
'plateAcquisitionCount': 0,
'permsCss': perms_css,
})
conn.SERVICE_OPTS.setOmeroGroup(plate_a.details.group.id.val)
marshaled = marshal_plates(conn, None)
assert marshaled == expected
def test_marshal_plates_no_results(self):
assert marshal_plates(self.conn, -1L) == []
