Python connect Examples

Example #1

File: excel.py Project: pombredanne/origins

 def setUp(self):
     self.path = os.path.join(TEST_DATA_DIR, 'chinook.xlsx')
     self.wb = origins.connect('excel', path=self.path)

Example #2

File: redcap_mysql.py Project: pombredanne/origins

 def setUp(self):
     self.project = origins.connect(
         "redcap-mysql", host=HOST, port=PORT, user=USER, password=PASSWORD, project="redcap_demo"
     )

Example #3

File: directory.py Project: pombredanne/origins

 def test_explicit_depth(self):
     d = origins.connect('directory', path=TEST_DATA_DIR, depth=1)
     self.assertTrue([f for f in d.files if '/' in f['name']])

Example #4

File: delimited.py Project: pombredanne/origins

 def setUp(self):
     self.path = os.path.join(TEST_DATA_DIR, "chinook_tracks.csv")
     self.f = origins.connect("delimited", path=self.path)

Example #5

File: directory.py Project: pombredanne/origins

 def setUp(self):
     self.directory = origins.connect('directory', path=TEST_DATA_DIR)

Example #6

File: directory.py Project: pombredanne/origins

 def test_no_recurse(self):
     d = origins.connect('directory', path=TEST_DATA_DIR, recurse=False)
     # Dirty way of ensuring the walk did not recurse
     self.assertFalse([f for f in d.files if '/' in f['name']])

Example #7

File: redcap_csv.py Project: pombredanne/origins

 def setUp(self):
     path = os.path.join(TEST_DATA_DIR, FILENAME)
     self.project = origins.connect('redcap-csv', path=path)

Example #8

File: mysql.py Project: pombredanne/origins

 def setUp(self):
     self.db = origins.connect('mysql', database='chinook', host=HOST,
                               user=USER, password=PASSWORD)

Example #9

File: oracle.py Project: aaron0browne/origins

 def setUp(self):
     self.load_backend()
     self.db = origins.connect('oracle', database='xe', user='******',
                               password='******')

Example #10

File: delimited.py Project: aaron0browne/origins

 def setUp(self):
     self.path = os.path.join(TEST_DATA_DIR, 'chinook_tracks.csv')
     self.f = origins.connect('delimited', path=self.path)

Example #11

File: oracle.py Project: aaron0browne/origins

 def test_db_schema(self):
     db = origins.connect('oracle', database='xe', user='******',
                          password='******', schema='chinook')
     self.assertTrue(db.tables)

Example #12

File: postgresql.py Project: pombredanne/origins

 def setUp(self):
     self.load_backend()
     self.db = origins.connect('postgresql', database='chinook', host=HOST,
                               user=USER, password=PASSWORD)

Example #13

File: sqlite.py Project: aaron0browne/origins

 def setUp(self):
     self.load_backend()
     path = os.path.join(TEST_DATA_DIR, 'chinook.sqlite')
     self.db = origins.connect('sqlite', path=path)

Example #14

File: datadict.py Project: aaron0browne/origins

 def setUp(self):
     self.path = os.path.join(TEST_DATA_DIR, 'chinook_tracks_datadict.csv')
     self.f = origins.connect('datadict', path=self.path)

Example #15

File: mongodb.py Project: pombredanne/origins

 def setUp(self):
     self.db = origins.connect("mongodb", database="chinook")

Example #16

File: vcf.py Project: aaron0browne/origins

 def setUp(self):
     self.path = os.path.join(TEST_DATA_DIR, 'sample.vcf')
     self.f = origins.connect('vcf', path=self.path)

Example #17

File: redcap_api.py Project: pombredanne/origins

 def setUp(self):
     self.project = origins.connect('redcap-api', name='redcap_demo',
                                    url=API_URL, token=API_TOKEN)