Python run_main_gather_fastq_contigset Examples

Example #1

File: gather_fastq.py Project: pombredanne/pbsmrtpipe

def rtc_runner(rtc):
    """
    :type rtc: pbcommand.models.ResolvedToolContract
    :return:
    """
    # the input file is just a sentinel file
    return run_main_gather_fastq_contigset(rtc.task.input_files[0], rtc.task.output_files[0], CHUNK_KEY)

Example #2

def rtc_runner(rtc):
    """
    :type rtc: pbcommand.models.ResolvedToolContract
    :return:
    """
    # the input file is just a sentinel file
    return run_main_gather_fastq_contigset(rtc.task.input_files[0],
                                           rtc.task.output_files[0], CHUNK_KEY)

Example #3

File: gather_fastq.py Project: pombredanne/pbsmrtpipe

def args_runner(args):
    return run_main_gather_fastq_contigset(args.cjson_in, args.fastq_out, CHUNK_KEY)

Example #4

def args_runner(args):
    return run_main_gather_fastq_contigset(args.cjson_in, args.fastq_out,
                                           CHUNK_KEY)