Esempio n. 1
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def rtc_runner(rtc):
    """
    :type rtc: pbcommand.models.ResolvedToolContract
    :return:
    """
    # the input file is just a sentinel file
    return run_main_gather_fastq_contigset(rtc.task.input_files[0], rtc.task.output_files[0], CHUNK_KEY)
Esempio n. 2
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def rtc_runner(rtc):
    """
    :type rtc: pbcommand.models.ResolvedToolContract
    :return:
    """
    # the input file is just a sentinel file
    return run_main_gather_fastq_contigset(rtc.task.input_files[0],
                                           rtc.task.output_files[0], CHUNK_KEY)
Esempio n. 3
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def args_runner(args):
    return run_main_gather_fastq_contigset(args.cjson_in, args.fastq_out, CHUNK_KEY)
Esempio n. 4
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def args_runner(args):
    return run_main_gather_fastq_contigset(args.cjson_in, args.fastq_out,
                                           CHUNK_KEY)