Example #1
0
 def test_get_genome_8(self):
     """Verify accession data from ticket is added to genome."""
     self.tkt1.data_add = set(["accession"])
     gnm = tickets.get_genome(self.tkt1, gnm_type="add")
     with self.subTest():
         self.assertEqual(gnm.host_genus, "")
     with self.subTest():
         self.assertEqual(gnm.accession, "ABC123")
Example #2
0
 def test_get_genome_7(self):
     """Verify retrieve_record data from ticket is added to genome."""
     self.tkt1.data_add = set(["retrieve_record"])
     gnm = tickets.get_genome(self.tkt1, gnm_type="add")
     with self.subTest():
         self.assertEqual(gnm.host_genus, "")
     with self.subTest():
         self.assertEqual(gnm.retrieve_record, 1)
Example #3
0
 def test_get_genome_6(self):
     """Verify annotation_author data from ticket is added to genome."""
     self.tkt1.data_add = set(["annotation_author"])
     gnm = tickets.get_genome(self.tkt1, gnm_type="add")
     with self.subTest():
         self.assertEqual(gnm.host_genus, "")
     with self.subTest():
         self.assertEqual(gnm.annotation_author, 1)
Example #4
0
 def test_get_genome_4(self):
     """Verify subcluster data from ticket is added to genome."""
     self.tkt1.data_add = set(["subcluster"])
     gnm = tickets.get_genome(self.tkt1, gnm_type="add")
     with self.subTest():
         self.assertEqual(gnm.host_genus, "")
     with self.subTest():
         self.assertEqual(gnm.subcluster, "A2")
Example #5
0
 def test_get_genome_2(self):
     """Verify host_genus data from ticket is added to genome."""
     self.tkt1.data_add = set(["host_genus"])
     gnm = tickets.get_genome(self.tkt1, gnm_type="add")
     with self.subTest():
         self.assertEqual(gnm.host_genus, "Mycobacterium")
     with self.subTest():
         self.assertEqual(gnm.cluster, "")
Example #6
0
 def test_get_genome_1(self):
     """Verify no data from ticket is added to genome."""
     self.tkt1.data_add = set([""])
     gnm = tickets.get_genome(self.tkt1, gnm_type="add")
     with self.subTest():
         self.assertEqual(gnm.id, "Trixie")
     with self.subTest():
         self.assertEqual(gnm.name, "Trixie_Draft")
     with self.subTest():
         self.assertEqual(gnm.type, "add")
     with self.subTest():
         self.assertEqual(gnm.host_genus, "")
     with self.subTest():
         self.assertEqual(gnm.cluster, "")
     with self.subTest():
         self.assertEqual(gnm.subcluster, "")
     with self.subTest():
         self.assertEqual(gnm.annotation_status, "")
     with self.subTest():
         self.assertEqual(gnm.annotation_author, -1)
     with self.subTest():
         self.assertEqual(gnm.retrieve_record, -1)
     with self.subTest():
         self.assertEqual(gnm.accession, "")