def test_get_genome_8(self):
"""Verify accession data from ticket is added to genome."""
self.tkt1.data_add = set(["accession"])
gnm = tickets.get_genome(self.tkt1, gnm_type="add")
with self.subTest():
self.assertEqual(gnm.host_genus, "")
with self.subTest():
self.assertEqual(gnm.accession, "ABC123")
def test_get_genome_7(self):
"""Verify retrieve_record data from ticket is added to genome."""
self.tkt1.data_add = set(["retrieve_record"])
gnm = tickets.get_genome(self.tkt1, gnm_type="add")
with self.subTest():
self.assertEqual(gnm.host_genus, "")
with self.subTest():
self.assertEqual(gnm.retrieve_record, 1)
def test_get_genome_6(self):
"""Verify annotation_author data from ticket is added to genome."""
self.tkt1.data_add = set(["annotation_author"])
gnm = tickets.get_genome(self.tkt1, gnm_type="add")
with self.subTest():
self.assertEqual(gnm.host_genus, "")
with self.subTest():
self.assertEqual(gnm.annotation_author, 1)
def test_get_genome_4(self):
"""Verify subcluster data from ticket is added to genome."""
self.tkt1.data_add = set(["subcluster"])
gnm = tickets.get_genome(self.tkt1, gnm_type="add")
with self.subTest():
self.assertEqual(gnm.host_genus, "")
with self.subTest():
self.assertEqual(gnm.subcluster, "A2")
def test_get_genome_2(self):
"""Verify host_genus data from ticket is added to genome."""
self.tkt1.data_add = set(["host_genus"])
gnm = tickets.get_genome(self.tkt1, gnm_type="add")
with self.subTest():
self.assertEqual(gnm.host_genus, "Mycobacterium")
with self.subTest():
self.assertEqual(gnm.cluster, "")
def test_get_genome_1(self):
"""Verify no data from ticket is added to genome."""
self.tkt1.data_add = set([""])
gnm = tickets.get_genome(self.tkt1, gnm_type="add")
with self.subTest():
self.assertEqual(gnm.id, "Trixie")
with self.subTest():
self.assertEqual(gnm.name, "Trixie_Draft")
with self.subTest():
self.assertEqual(gnm.type, "add")
with self.subTest():
self.assertEqual(gnm.host_genus, "")
with self.subTest():
self.assertEqual(gnm.cluster, "")
with self.subTest():
self.assertEqual(gnm.subcluster, "")
with self.subTest():
self.assertEqual(gnm.annotation_status, "")
with self.subTest():
self.assertEqual(gnm.annotation_author, -1)
with self.subTest():
self.assertEqual(gnm.retrieve_record, -1)
with self.subTest():
self.assertEqual(gnm.accession, "")