def __call__(self, **kwargs): self.set(**kwargs) self.checkSanity() mcmc.use_unimap = True mcmc.mapping_move_weight = self.mapping_move_weight mcmc.unimap_fast_nni_move_weight = self.unimap_fast_nni_move_weight mcmc.unimap_nni_move_weight = self.unimap_nni_move_weight mcmc.unimap_thread_count = self.unimap_thread_count mcmc.unimap_ls_move_weight = self.unimap_ls_move_weight mcmc.unimap_sample_ambig_move_weight = self.unimap_sample_ambig_move_weight mcmc.unimap_node_slide_move_weight = self.unimap_node_slide_move_weight mcmc.unimap_edge_move_weight = self.unimap_edge_move_weight mcmc()
def __call__(self, **kwargs): self.set(**kwargs) self.checkSanity() c = copy.deepcopy(self) cpo_impl = CPOImpl(c) cpo_impl.siteLikeFileOpen() if cpo_impl.sitelikef is not None: mcmc.sitelikef = cpo_impl.sitelikef mcmc.saving_sitelikes = True mcmc() mcmc.saving_sitelikes = False cpo_impl.siteLikeFileClose() else: print "Could not run the cpo command because the sitelike file could not be opened"
def __call__(self, **kwargs): self.set(**kwargs) self.checkSanity() mcmc.doing_steppingstone_sampling = True mcmc.ssobj = self if self.ti: mcmc.ss_heating_likelihood = True else: mcmc.ss_heating_likelihood = False mcmc() mcmc.ss_heating_likelihood = False mcmc.doing_steppingstone_sampling = False mcmc.ssobj = None self.sampled_betas = mcmc.ss_sampled_betas self.sampled_likes = mcmc.ss_sampled_likes
def __call__(self, **kwargs): self.set(**kwargs) self.checkSanity() prev_report_every = mcmc.report_every mcmc.report_every = self.report_every prev_sample_every = mcmc.sample_every mcmc.sample_every = self.sample_every mcmc.doing_steppingstone_sampling = True mcmc.ssobj = self mcmc.ss_heating_likelihood = False if self.refdist_is_prior: mcmc.ss_heating_likelihood = True # performing TI and non-generalized SS mcmc() mcmc.ss_heating_likelihood = False mcmc.doing_steppingstone_sampling = False mcmc.ssobj = None self.sampled_betas = mcmc.ss_sampled_betas self.sampled_likes = mcmc.ss_sampled_likes mcmc.report_every = prev_report_every mcmc.sample_every = prev_sample_every