def __call__(self, **kwargs):
self.set(**kwargs)
self.checkSanity()
mcmc.use_unimap = True
mcmc.mapping_move_weight = self.mapping_move_weight
mcmc.unimap_fast_nni_move_weight = self.unimap_fast_nni_move_weight
mcmc.unimap_nni_move_weight = self.unimap_nni_move_weight
mcmc.unimap_thread_count = self.unimap_thread_count
mcmc.unimap_ls_move_weight = self.unimap_ls_move_weight
mcmc.unimap_sample_ambig_move_weight = self.unimap_sample_ambig_move_weight
mcmc.unimap_node_slide_move_weight = self.unimap_node_slide_move_weight
mcmc.unimap_edge_move_weight = self.unimap_edge_move_weight
mcmc()
def __call__(self, **kwargs):
self.set(**kwargs)
self.checkSanity()
c = copy.deepcopy(self)
cpo_impl = CPOImpl(c)
cpo_impl.siteLikeFileOpen()
if cpo_impl.sitelikef is not None:
mcmc.sitelikef = cpo_impl.sitelikef
mcmc.saving_sitelikes = True
mcmc()
mcmc.saving_sitelikes = False
cpo_impl.siteLikeFileClose()
else:
print "Could not run the cpo command because the sitelike file could not be opened"
def __call__(self, **kwargs):
self.set(**kwargs)
self.checkSanity()
mcmc.doing_steppingstone_sampling = True
mcmc.ssobj = self
if self.ti:
mcmc.ss_heating_likelihood = True
else:
mcmc.ss_heating_likelihood = False
mcmc()
mcmc.ss_heating_likelihood = False
mcmc.doing_steppingstone_sampling = False
mcmc.ssobj = None
self.sampled_betas = mcmc.ss_sampled_betas
self.sampled_likes = mcmc.ss_sampled_likes
def __call__(self, **kwargs):
self.set(**kwargs)
self.checkSanity()
prev_report_every = mcmc.report_every
mcmc.report_every = self.report_every
prev_sample_every = mcmc.sample_every
mcmc.sample_every = self.sample_every
mcmc.doing_steppingstone_sampling = True
mcmc.ssobj = self
mcmc.ss_heating_likelihood = False
if self.refdist_is_prior:
mcmc.ss_heating_likelihood = True # performing TI and non-generalized SS
mcmc()
mcmc.ss_heating_likelihood = False
mcmc.doing_steppingstone_sampling = False
mcmc.ssobj = None
self.sampled_betas = mcmc.ss_sampled_betas
self.sampled_likes = mcmc.ss_sampled_likes
mcmc.report_every = prev_report_every
mcmc.sample_every = prev_sample_every