#################################### import sys ############# if not (('-h' in sys.argv) or ('--help' in sys.argv)): print '\n...Importing packages...' ############# ### load requirements import os import subprocess import argparse from args_impute import parserbase, parserphase, parserref, parsercluster, parserjob from py_helpers import unbuffer_stdout, link, find_exec, read_conf from blueprint import send_job unbuffer_stdout() ############# if not (('-h' in sys.argv) or ('--help' in sys.argv)): print '\n...Parsing arguments...' ############# parser = argparse.ArgumentParser( prog='shape_rel.py', formatter_class=lambda prog: argparse.ArgumentDefaultsHelpFormatter( prog, max_help_position=40), parents=[parserbase, parserphase, parserref, parsercluster, parserjob]) parser.add_argument( '--ref-dir', type=str,
############# if not (("-h" in sys.argv) or ("--help" in sys.argv)): print "\n...Importing packages..." ############# import os # import subprocess import argparse import copy # from glob import glob from args_chunks import * from py_helpers import unbuffer_stdout, file_len, warn_format unbuffer_stdout() import warnings warnings.formatwarning = warn_format ############# if not (("-h" in sys.argv) or ("--help" in sys.argv)): print "\n...Parsing arguments..." ############# parser = argparse.ArgumentParser( prog="chunk_snps.py", formatter_class=lambda prog: argparse.ArgumentDefaultsHelpFormatter(prog, max_help_position=40), parents=[parserbase, parsersnpchunk], )