####################################
import sys
#############
if not (('-h' in sys.argv) or ('--help' in sys.argv)):
print '\n...Importing packages...'
#############
### load requirements
import os
import subprocess
import argparse
from args_impute import parserbase, parserphase, parserref, parsercluster, parserjob
from py_helpers import unbuffer_stdout, link, find_exec, read_conf
from blueprint import send_job
unbuffer_stdout()
#############
if not (('-h' in sys.argv) or ('--help' in sys.argv)):
print '\n...Parsing arguments...'
#############
parser = argparse.ArgumentParser(
prog='shape_rel.py',
formatter_class=lambda prog: argparse.ArgumentDefaultsHelpFormatter(
prog, max_help_position=40),
parents=[parserbase, parserphase, parserref, parsercluster, parserjob])
parser.add_argument(
'--ref-dir',
type=str,
#############
if not (("-h" in sys.argv) or ("--help" in sys.argv)):
print "\n...Importing packages..."
#############
import os
# import subprocess
import argparse
import copy
# from glob import glob
from args_chunks import *
from py_helpers import unbuffer_stdout, file_len, warn_format
unbuffer_stdout()
import warnings
warnings.formatwarning = warn_format
#############
if not (("-h" in sys.argv) or ("--help" in sys.argv)):
print "\n...Parsing arguments..."
#############
parser = argparse.ArgumentParser(
prog="chunk_snps.py",
formatter_class=lambda prog: argparse.ArgumentDefaultsHelpFormatter(prog, max_help_position=40),
parents=[parserbase, parsersnpchunk],
)
