Python Track.get Examples

Example #1

File: bias.py Project: JordiAlbert/NucleoATAC

 def get(self, start = None, end = None, pos = None, log = None):
     """Obtain values for particular region"""
     out = Track.get(self, start, end, pos)
     if log is None:
         return out
     elif log:
         if self.log:
             return out
         else:
             return np.log(out)
     else:
         if self.log:
             return np.exp(out)
         else:
             return out

Example #2

File: bias.py Project: wzthu/NucleoATAC

 def get(self, start=None, end=None, pos=None, log=None):
     """Obtain values for particular region"""
     out = Track.get(self, start, end, pos)
     if log is None:
         return out
     elif log:
         if self.log:
             return out
         else:
             return np.log(out)
     else:
         if self.log:
             return np.exp(out)
         else:
             return out

Example #3

File: test_tracks.py Project: kesteph/NucleoATAC

 def test_read_and_get(self):
     """test the read and get functionality of track class"""
     track = Track(self.chunk.chrom, self.chunk.start, self.chunk.end)
     track.read_track("example/example.Scores.bedgraph.gz")
     val = 1.35994655714
     self.assertTrue(abs(val - track.get(pos=706661)) < 0.001)

Example #4

File: test_tracks.py Project: xubeisi/NucleoATAC

 def test_read_and_get(self):
     """test the read and get functionality of track class"""
     track = Track(self.chunk.chrom, self.chunk.start, self.chunk.end)
     track.read_track('example/example.Scores.bedgraph.gz')
     val = 1.35994655714
     self.assertTrue(abs(val - track.get(pos=706661)) < 0.001)