def get(self, start = None, end = None, pos = None, log = None):
"""Obtain values for particular region"""
out = Track.get(self, start, end, pos)
if log is None:
return out
elif log:
if self.log:
return out
else:
return np.log(out)
else:
if self.log:
return np.exp(out)
else:
return out
def get(self, start=None, end=None, pos=None, log=None):
"""Obtain values for particular region"""
out = Track.get(self, start, end, pos)
if log is None:
return out
elif log:
if self.log:
return out
else:
return np.log(out)
else:
if self.log:
return np.exp(out)
else:
return out
def test_read_and_get(self):
"""test the read and get functionality of track class"""
track = Track(self.chunk.chrom, self.chunk.start, self.chunk.end)
track.read_track("example/example.Scores.bedgraph.gz")
val = 1.35994655714
self.assertTrue(abs(val - track.get(pos=706661)) < 0.001)
def test_read_and_get(self):
"""test the read and get functionality of track class"""
track = Track(self.chunk.chrom, self.chunk.start, self.chunk.end)
track.read_track('example/example.Scores.bedgraph.gz')
val = 1.35994655714
self.assertTrue(abs(val - track.get(pos=706661)) < 0.001)