Python format_ratio Examples

Example #1

File: psl.py Project: ifiddes/pycbio

 def coverage(self):
     return 100 * format_ratio(self.matches + self.mismatches + self.repmatches, self.q_size)

Example #2

File: psl.py Project: ifiddes/pycbio

 def target_coverage(self):
     return 100 * format_ratio(self.matches + self.mismatches + self.repmatches, self.t_size)

Example #3

File: psl.py Project: ifiddes/pycbio

 def percent_n(self):
     return 100 * format_ratio(self.n_count, self.q_size)

Example #4

File: psl.py Project: ifiddes/pycbio

 def identity(self):
     return 100 * format_ratio(self.matches + self.repmatches,
                               self.matches + self.repmatches + self.mismatches + self.q_num_insert)