Python AtomicCmdBuilder.add_multiple_options Examples

Example #1

File: builder_test.py Project: UMNPonyClub/paleomix

def test_builder__add_multiple_options_multiple_times():
    expected = {"IN_FILE_01": "file_a", "IN_FILE_02": "file_b"}

    builder = AtomicCmdBuilder("ls")
    kwargs = builder.add_multiple_options("-i", ("file_a",))
    assert_equal(kwargs, {"IN_FILE_01": "file_a"})
    kwargs = builder.add_multiple_options("-i", ("file_b",))
    assert_equal(kwargs, {"IN_FILE_02": "file_b"})

    assert_equal(builder.kwargs, expected)
    assert_equal(builder.call, ["ls", "-i", "%(IN_FILE_01)s", "-i", "%(IN_FILE_02)s"])

Example #2

File: builder_test.py Project: UMNPonyClub/paleomix

def test_builder__add_multiple_options_with_template():
    values = ("file_a", "file_b")
    expected = {"OUT_BAM_1": "file_a", "OUT_BAM_2": "file_b"}

    builder = AtomicCmdBuilder("ls")
    kwargs = builder.add_multiple_options("-i", values, template="OUT_BAM_%i")

    assert_equal(kwargs, expected)
    assert_equal(builder.kwargs, expected)
    assert_equal(builder.call, ["ls", "-i", "%(OUT_BAM_1)s", "-i", "%(OUT_BAM_2)s"])

Example #3

File: builder_test.py Project: UMNPonyClub/paleomix

def test_builder__add_multiple_options_with_sep():
    values = ("file_a", "file_b")
    expected = {"IN_FILE_01": "file_a", "IN_FILE_02": "file_b"}

    builder = AtomicCmdBuilder("ls")
    kwargs = builder.add_multiple_options("-i", values, sep="=")

    assert_equal(kwargs, expected)
    assert_equal(builder.kwargs, expected)
    assert_equal(builder.call, ["ls", "-i=%(IN_FILE_01)s", "-i=%(IN_FILE_02)s"])

Example #4

def test_builder__add_multiple_options_with_template_fixed():
    values = ("file_a", "file_b")
    expected = {"IN_FILE_01": "file_a", "IN_FILE_02": "file_b"}

    builder = AtomicCmdBuilder("ls")
    kwargs = builder.add_multiple_options("-i", values)

    assert_equal(kwargs, expected)
    assert_equal(builder.kwargs, expected)
    assert_raises(AtomicCmdBuilderError, builder.add_multiple_options, "-i",
                  values)

Example #5

def test_builder__add_multiple_options_with_template():
    values = ("file_a", "file_b")
    expected = {"OUT_BAM_1": "file_a", "OUT_BAM_2": "file_b"}

    builder = AtomicCmdBuilder("ls")
    kwargs = builder.add_multiple_options("-i", values, template="OUT_BAM_%i")

    assert_equal(kwargs, expected)
    assert_equal(builder.kwargs, expected)
    assert_equal(builder.call,
                 ["ls", "-i", "%(OUT_BAM_1)s", "-i", "%(OUT_BAM_2)s"])

Example #6

def test_builder__add_multiple_options_with_sep():
    values = ("file_a", "file_b")
    expected = {"IN_FILE_01": "file_a", "IN_FILE_02": "file_b"}

    builder = AtomicCmdBuilder("ls")
    kwargs = builder.add_multiple_options("-i", values, sep="=")

    assert_equal(kwargs, expected)
    assert_equal(builder.kwargs, expected)
    assert_equal(builder.call,
                 ["ls", "-i=%(IN_FILE_01)s", "-i=%(IN_FILE_02)s"])

Example #7

File: builder_test.py Project: health1987/paleomix

def test_builder__add_multiple_options_with_template_fixed():
    values = ("file_a", "file_b")
    expected = {"IN_FILE_01": "file_a", "IN_FILE_02": "file_b"}

    builder = AtomicCmdBuilder("ls")
    kwargs = builder.add_multiple_options("-i", values)

    assert_equal(kwargs, expected)
    assert_equal(builder.kwargs, expected)
    assert_raises(AtomicCmdBuilderError,
                  builder.add_multiple_options, "-i", values)