def test_builder__add_multiple_options_multiple_times():
expected = {"IN_FILE_01": "file_a", "IN_FILE_02": "file_b"}
builder = AtomicCmdBuilder("ls")
kwargs = builder.add_multiple_options("-i", ("file_a",))
assert_equal(kwargs, {"IN_FILE_01": "file_a"})
kwargs = builder.add_multiple_options("-i", ("file_b",))
assert_equal(kwargs, {"IN_FILE_02": "file_b"})
assert_equal(builder.kwargs, expected)
assert_equal(builder.call, ["ls", "-i", "%(IN_FILE_01)s", "-i", "%(IN_FILE_02)s"])
def test_builder__add_multiple_options_with_template():
values = ("file_a", "file_b")
expected = {"OUT_BAM_1": "file_a", "OUT_BAM_2": "file_b"}
builder = AtomicCmdBuilder("ls")
kwargs = builder.add_multiple_options("-i", values, template="OUT_BAM_%i")
assert_equal(kwargs, expected)
assert_equal(builder.kwargs, expected)
assert_equal(builder.call, ["ls", "-i", "%(OUT_BAM_1)s", "-i", "%(OUT_BAM_2)s"])
def test_builder__add_multiple_options_with_sep():
values = ("file_a", "file_b")
expected = {"IN_FILE_01": "file_a", "IN_FILE_02": "file_b"}
builder = AtomicCmdBuilder("ls")
kwargs = builder.add_multiple_options("-i", values, sep="=")
assert_equal(kwargs, expected)
assert_equal(builder.kwargs, expected)
assert_equal(builder.call, ["ls", "-i=%(IN_FILE_01)s", "-i=%(IN_FILE_02)s"])
def test_builder__add_multiple_options_with_template_fixed():
values = ("file_a", "file_b")
expected = {"IN_FILE_01": "file_a", "IN_FILE_02": "file_b"}
builder = AtomicCmdBuilder("ls")
kwargs = builder.add_multiple_options("-i", values)
assert_equal(kwargs, expected)
assert_equal(builder.kwargs, expected)
assert_raises(AtomicCmdBuilderError, builder.add_multiple_options, "-i",
values)
def test_builder__add_multiple_options_with_template():
values = ("file_a", "file_b")
expected = {"OUT_BAM_1": "file_a", "OUT_BAM_2": "file_b"}
builder = AtomicCmdBuilder("ls")
kwargs = builder.add_multiple_options("-i", values, template="OUT_BAM_%i")
assert_equal(kwargs, expected)
assert_equal(builder.kwargs, expected)
assert_equal(builder.call,
["ls", "-i", "%(OUT_BAM_1)s", "-i", "%(OUT_BAM_2)s"])
def test_builder__add_multiple_options_with_sep():
values = ("file_a", "file_b")
expected = {"IN_FILE_01": "file_a", "IN_FILE_02": "file_b"}
builder = AtomicCmdBuilder("ls")
kwargs = builder.add_multiple_options("-i", values, sep="=")
assert_equal(kwargs, expected)
assert_equal(builder.kwargs, expected)
assert_equal(builder.call,
["ls", "-i=%(IN_FILE_01)s", "-i=%(IN_FILE_02)s"])
def test_builder__add_multiple_options_with_template_fixed():
values = ("file_a", "file_b")
expected = {"IN_FILE_01": "file_a", "IN_FILE_02": "file_b"}
builder = AtomicCmdBuilder("ls")
kwargs = builder.add_multiple_options("-i", values)
assert_equal(kwargs, expected)
assert_equal(builder.kwargs, expected)
assert_raises(AtomicCmdBuilderError,
builder.add_multiple_options, "-i", values)
