class CoordinatesTiltPair(TiltPairSet): """Represents a Coordinates Tilt Pair""" ITEM_TYPE = TiltPair def __init__(self, **kwargs): TiltPairSet.__init__(self, **kwargs) self._angles = SetOfAngles() self._micsPair = Pointer() def getAngles(self): return self._angles def getMicsPair(self): return self._micsPair.get() def setAngles(self, setAngles): self._angles = setAngles def setMicsPair(self, micsPair): self._micsPair.set(micsPair) def getFiles(self): filePaths = TiltPairSet.getFiles(self) filePaths.update(self.getAngles().getFiles()) filePaths.update(self.getMicsPair().getFiles()) return filePaths def _loadClassesDict(self): return globals() def close(self): TiltPairSet.close(self) self.getAngles().close()
def launch_viewer(request): project = loadProject(request) objectId = request.GET.get('objectId') # Fix this, now we should use newer notation: . instead of :: if '::' in objectId: idParts = objectId.split("::") if idParts[1] != 'None': # We use the logic in Pointer.get to handle the 'extended' # parts that can come as part of the id (eg: 2::outputAverages::1) protObj = project.getObject(int(idParts[0])) pointer = Pointer(value=protObj) pointer.setExtendedParts(idParts[1:]) obj = pointer.get() else: # obj = project.getObject(int(idParts[0])) else: obj = project.getObject(int(objectId)) if obj is not None: if obj.isPointer(): obj = obj.get() viewers = findViewers(obj.getClassName(), WEB_DJANGO) if len(viewers) == 0: views = [] if isinstance(obj, EMProtocol): for _, output in obj.iterOutputAttributes(EMObject): objViewers = findViewers(output.getClassName(), WEB_DJANGO) if objViewers: views += objViewers[0](project=project)._visualize(output) or [] if not views: views = [MessageView("No viewers found for object type: %s" % obj.getClassName())] urls = [viewToUrl(request, view) for view in views] else: viewerClass = viewers[0] viewer = viewerClass(project=project, protocol=obj) # Lets assume if there is a viewer for the protocol # it will be a ProtocolViewer with a Form if issubclass(viewerClass, ProtocolViewer): urls = [viewerForm(project, obj, viewer, request)] else: views = viewer._visualize(obj) urls = [viewToUrl(request, v) for v in views] else: views = [MessageView("Object not found to visualize")] urls = [viewToUrl(request, view) for view in views] jsonStr = json.dumps(urls, ensure_ascii=False) return HttpResponse(jsonStr, content_type='application/javascript')
class CoordinatesTiltPair(EMSet): """Represents a Coordinates Tilt Pair""" ITEM_TYPE = TiltPair def __init__(self, **args): EMSet.__init__(self, **args) self._tilted = None#SetOfCoordinates() self._untilted = None#SetOfCoordinates() self._angles = SetOfAngles() self._micsPair = Pointer() def getUntilted(self): return self._untilted def getTilted(self): return self._tilted def getAngles(self): return self._angles def getMicsPair(self): return self._micsPair.get() def setUntilted(self, untilted): self._untilted = untilted def setTilted(self, tilted): self._tilted = tilted def setAngles(self, setAngles): self._angles = setAngles def setMicsPair(self, micsPair): self._micsPair.set(micsPair) def getFiles(self): filePaths = set() filePaths.add(self.getTilted().getFiles) filePaths.add(self.getUntilted().getFiles) return filePaths def _loadClassesDict(self): return globals() def close(self): self._tilted.close() self._untilted.close() EMSet.close(self)
class ParticlesTiltPair(TiltPairSet): """Represents a Particles Tilt Pair""" ITEM_TYPE = TiltPair def __init__(self, **kwargs): TiltPairSet.__init__(self, **kwargs) self._coordsPair = Pointer() def getCoordsPair(self): return self._coordsPair.get() def setCoordsPair(self, coordsPair): self._coordsPair.set(coordsPair) def getFiles(self): filePaths = TiltPairSet.getFiles(self) filePaths.update(self.getCoordsPair().getFiles()) return filePaths
class ParticlesTiltPair(EMSet): """Represents a Particles Tilt Pair""" ITEM_TYPE = TiltPair def __init__(self, **args): EMSet.__init__(self, **args) self._tilted = None#SetOfImages() self._untilted = None#SetOfImages() self._coordsPair = Pointer() def getUntilted(self): return self._untilted def getTilted(self): return self._tilted def getCoordsPair(self): return self._coordsPair.get() def setUntilted(self, untilted): self._untilted = untilted def setTilted(self, tilted): self._tilted = tilted def setCoordsPair(self, coordsPair): self._coordsPair.set(coordsPair) def getFiles(self): filePaths = set() filePaths.add(self.getTilted().getFiles) filePaths.add(self.getUntilted().getFiles) return filePaths def _loadClassesDict(self): return globals() def close(self): self._tilted.close() self._untilted.close() EMSet.close(self)
class CoordinatesTiltPair(TiltPairSet): """Represents a Coordinates Tilt Pair""" ITEM_TYPE = TiltPair def __init__(self, **kwargs): TiltPairSet.__init__(self, **kwargs) self._angles = None self._micsPair = Pointer() def getAngles(self): return self._angles def getBoxSize(self): return self.getUntilted().getBoxSize() def getMicsPair(self): return self._micsPair.get() def setAngles(self, setAngles): self._angles = setAngles def setMicsPair(self, micsPair): self._micsPair.set(micsPair) def getFiles(self): filePaths = TiltPairSet.getFiles(self) filePaths.update(self.getAngles().getFiles()) filePaths.update(self.getMicsPair().getFiles()) return filePaths def _loadClassesDict(self): return globals() def close(self): TiltPairSet.close(self) if self.getAngles(): self.getAngles().close()