class CoordinatesTiltPair(TiltPairSet):
"""Represents a Coordinates Tilt Pair"""
ITEM_TYPE = TiltPair
def __init__(self, **kwargs):
TiltPairSet.__init__(self, **kwargs)
self._angles = SetOfAngles()
self._micsPair = Pointer()
def getAngles(self):
return self._angles
def getMicsPair(self):
return self._micsPair.get()
def setAngles(self, setAngles):
self._angles = setAngles
def setMicsPair(self, micsPair):
self._micsPair.set(micsPair)
def getFiles(self):
filePaths = TiltPairSet.getFiles(self)
filePaths.update(self.getAngles().getFiles())
filePaths.update(self.getMicsPair().getFiles())
return filePaths
def _loadClassesDict(self):
return globals()
def close(self):
TiltPairSet.close(self)
self.getAngles().close()
def launch_viewer(request):
project = loadProject(request)
objectId = request.GET.get('objectId')
# Fix this, now we should use newer notation: . instead of ::
if '::' in objectId:
idParts = objectId.split("::")
if idParts[1] != 'None':
# We use the logic in Pointer.get to handle the 'extended'
# parts that can come as part of the id (eg: 2::outputAverages::1)
protObj = project.getObject(int(idParts[0]))
pointer = Pointer(value=protObj)
pointer.setExtendedParts(idParts[1:])
obj = pointer.get()
else:
#
obj = project.getObject(int(idParts[0]))
else:
obj = project.getObject(int(objectId))
if obj is not None:
if obj.isPointer():
obj = obj.get()
viewers = findViewers(obj.getClassName(), WEB_DJANGO)
if len(viewers) == 0:
views = []
if isinstance(obj, EMProtocol):
for _, output in obj.iterOutputAttributes(EMObject):
objViewers = findViewers(output.getClassName(), WEB_DJANGO)
if objViewers:
views += objViewers[0](project=project)._visualize(output) or []
if not views:
views = [MessageView("No viewers found for object type: %s" % obj.getClassName())]
urls = [viewToUrl(request, view) for view in views]
else:
viewerClass = viewers[0]
viewer = viewerClass(project=project, protocol=obj)
# Lets assume if there is a viewer for the protocol
# it will be a ProtocolViewer with a Form
if issubclass(viewerClass, ProtocolViewer):
urls = [viewerForm(project, obj, viewer, request)]
else:
views = viewer._visualize(obj)
urls = [viewToUrl(request, v) for v in views]
else:
views = [MessageView("Object not found to visualize")]
urls = [viewToUrl(request, view) for view in views]
jsonStr = json.dumps(urls, ensure_ascii=False)
return HttpResponse(jsonStr, content_type='application/javascript')
class CoordinatesTiltPair(EMSet):
"""Represents a Coordinates Tilt Pair"""
ITEM_TYPE = TiltPair
def __init__(self, **args):
EMSet.__init__(self, **args)
self._tilted = None#SetOfCoordinates()
self._untilted = None#SetOfCoordinates()
self._angles = SetOfAngles()
self._micsPair = Pointer()
def getUntilted(self):
return self._untilted
def getTilted(self):
return self._tilted
def getAngles(self):
return self._angles
def getMicsPair(self):
return self._micsPair.get()
def setUntilted(self, untilted):
self._untilted = untilted
def setTilted(self, tilted):
self._tilted = tilted
def setAngles(self, setAngles):
self._angles = setAngles
def setMicsPair(self, micsPair):
self._micsPair.set(micsPair)
def getFiles(self):
filePaths = set()
filePaths.add(self.getTilted().getFiles)
filePaths.add(self.getUntilted().getFiles)
return filePaths
def _loadClassesDict(self):
return globals()
def close(self):
self._tilted.close()
self._untilted.close()
EMSet.close(self)
class ParticlesTiltPair(TiltPairSet):
"""Represents a Particles Tilt Pair"""
ITEM_TYPE = TiltPair
def __init__(self, **kwargs):
TiltPairSet.__init__(self, **kwargs)
self._coordsPair = Pointer()
def getCoordsPair(self):
return self._coordsPair.get()
def setCoordsPair(self, coordsPair):
self._coordsPair.set(coordsPair)
def getFiles(self):
filePaths = TiltPairSet.getFiles(self)
filePaths.update(self.getCoordsPair().getFiles())
return filePaths
class ParticlesTiltPair(EMSet):
"""Represents a Particles Tilt Pair"""
ITEM_TYPE = TiltPair
def __init__(self, **args):
EMSet.__init__(self, **args)
self._tilted = None#SetOfImages()
self._untilted = None#SetOfImages()
self._coordsPair = Pointer()
def getUntilted(self):
return self._untilted
def getTilted(self):
return self._tilted
def getCoordsPair(self):
return self._coordsPair.get()
def setUntilted(self, untilted):
self._untilted = untilted
def setTilted(self, tilted):
self._tilted = tilted
def setCoordsPair(self, coordsPair):
self._coordsPair.set(coordsPair)
def getFiles(self):
filePaths = set()
filePaths.add(self.getTilted().getFiles)
filePaths.add(self.getUntilted().getFiles)
return filePaths
def _loadClassesDict(self):
return globals()
def close(self):
self._tilted.close()
self._untilted.close()
EMSet.close(self)
class ParticlesTiltPair(TiltPairSet):
"""Represents a Particles Tilt Pair"""
ITEM_TYPE = TiltPair
def __init__(self, **kwargs):
TiltPairSet.__init__(self, **kwargs)
self._coordsPair = Pointer()
def getCoordsPair(self):
return self._coordsPair.get()
def setCoordsPair(self, coordsPair):
self._coordsPair.set(coordsPair)
def getFiles(self):
filePaths = TiltPairSet.getFiles(self)
filePaths.update(self.getCoordsPair().getFiles())
return filePaths
class CoordinatesTiltPair(TiltPairSet):
"""Represents a Coordinates Tilt Pair"""
ITEM_TYPE = TiltPair
def __init__(self, **kwargs):
TiltPairSet.__init__(self, **kwargs)
self._angles = None
self._micsPair = Pointer()
def getAngles(self):
return self._angles
def getBoxSize(self):
return self.getUntilted().getBoxSize()
def getMicsPair(self):
return self._micsPair.get()
def setAngles(self, setAngles):
self._angles = setAngles
def setMicsPair(self, micsPair):
self._micsPair.set(micsPair)
def getFiles(self):
filePaths = TiltPairSet.getFiles(self)
filePaths.update(self.getAngles().getFiles())
filePaths.update(self.getMicsPair().getFiles())
return filePaths
def _loadClassesDict(self):
return globals()
def close(self):
TiltPairSet.close(self)
if self.getAngles():
self.getAngles().close()
