Python make_fastq_rec Examples

Example #1

File: test_make_fastq.py Project: Jorge-C/qiime

    def test_make_fasta_rec(self):
        """make_fasta_rec should return expected results."""
        header = '>E2_1 FYI2DSB01B17QJ orig_bc=ATCACTAGTCAC new_bc=ATCACTAGTCAC bc_diffs=0'
        seq = 'CTGGTC'
        qual = map(int, '32 32 32 19 19 19'.split())
        self.assertEqual(make_fastq_rec(header, seq, qual),
"""@E2_1 FYI2DSB01B17QJ orig_bc=ATCACTAGTCAC new_bc=ATCACTAGTCAC bc_diffs=0
CTGGTC
+E2_1 FYI2DSB01B17QJ orig_bc=ATCACTAGTCAC new_bc=ATCACTAGTCAC bc_diffs=0
AAA444""")

Example #2

File: test_make_fastq.py Project: TankMermaid/qiime-1

    def test_make_fasta_rec(self):
        """make_fasta_rec should return expected results."""
        header = '>E2_1 FYI2DSB01B17QJ orig_bc=ATCACTAGTCAC new_bc=ATCACTAGTCAC bc_diffs=0'
        seq = 'CTGGTC'
        qual = map(int, '32 32 32 19 19 19'.split())
        self.assertEqual(
            make_fastq_rec(header, seq, qual),
            """@E2_1 FYI2DSB01B17QJ orig_bc=ATCACTAGTCAC new_bc=ATCACTAGTCAC bc_diffs=0
CTGGTC
+E2_1 FYI2DSB01B17QJ orig_bc=ATCACTAGTCAC new_bc=ATCACTAGTCAC bc_diffs=0
AAA444""")