def setUp(self):
super().setUp()
np.random.seed(50)
pauli_dict = {
'paulis': [{"coeff": {"imag": 0.0, "real": -1.052373245772859}, "label": "II"},
{"coeff": {"imag": 0.0, "real": 0.39793742484318045}, "label": "IZ"},
{"coeff": {"imag": 0.0, "real": -0.39793742484318045}, "label": "ZI"},
{"coeff": {"imag": 0.0, "real": -0.01128010425623538}, "label": "ZZ"},
{"coeff": {"imag": 0.0, "real": 0.18093119978423156}, "label": "XX"}
]
}
qubit_op = Operator.load_from_dict(pauli_dict)
self.algo_input = EnergyInput(qubit_op)
backends = ['statevector_simulator', 'qasm_simulator']
res = {}
for backend in backends:
params_no_caching = {
'algorithm': {'name': 'VQE', 'operator_mode': 'matrix' if backend == 'statevector_simulator' else 'paulis'},
'problem': {'name': 'energy',
'random_seed': 50,
'circuit_caching': False,
'skip_qobj_deepcopy': False,
'skip_qobj_validation': False,
'circuit_cache_file': None,
},
'backend': {'provider': 'qiskit.BasicAer', 'name': backend, 'shots': 1000},
}
qiskit_aqua = QiskitAqua(params_no_caching, self.algo_input)
res[backend] = qiskit_aqua.run()
self.reference_vqe_result = res
def test_vqe_caching_via_run_algorithm(self, backend, caching, skip_qobj_deepcopy):
skip_validation = True
params_caching = {
'algorithm': {'name': 'VQE', 'operator_mode': 'matrix' if backend == 'statevector_simulator' else 'paulis'},
'problem': {'name': 'energy',
'random_seed': 50,
'circuit_caching': caching,
'skip_qobj_deepcopy': skip_qobj_deepcopy,
'skip_qobj_validation': skip_validation,
'circuit_cache_file': None,
},
'backend': {'provider': 'qiskit.BasicAer', 'name': backend, 'shots': 1000},
}
qiskit_aqua = QiskitAqua(params_caching, self.algo_input)
result_caching = qiskit_aqua.run()
self.assertAlmostEqual(result_caching['energy'], self.reference_vqe_result[backend]['energy'])
np.testing.assert_array_almost_equal(self.reference_vqe_result[backend]['eigvals'],
result_caching['eigvals'], 5)
np.testing.assert_array_almost_equal(self.reference_vqe_result[backend]['opt_params'],
result_caching['opt_params'], 5)
if qiskit_aqua.quantum_instance.has_circuit_caching:
self.assertEqual(qiskit_aqua.quantum_instance._circuit_cache.misses, 0)
self.assertIn('eval_count', result_caching)
self.assertIn('eval_time', result_caching)
def _build_refrence_result(self, backends):
res = {}
os.environ.pop('QISKIT_AQUA_CIRCUIT_CACHE', None)
for backend in backends:
params_no_caching = {
'algorithm': {
'name': 'VQE'
},
'problem': {
'name': 'energy',
'random_seed': 50,
'circuit_caching': False,
'skip_qobj_deepcopy': False,
'skip_qobj_validation': False,
'circuit_cache_file': None,
},
'backend': {
'provider': 'qiskit.BasicAer',
'name': backend
},
}
if backend != 'statevector_simulator':
params_no_caching['backend']['shots'] = 1000
params_no_caching['optimizer'] = {
'name': 'SPSA',
'max_trials': 15
}
qiskit_aqua = QiskitAqua(params_no_caching, self.algo_input)
res[backend] = qiskit_aqua.run()
os.environ['QISKIT_AQUA_CIRCUIT_CACHE'] = '1'
self.reference_vqe_result = res
def _build_refrence_result(self, backends):
res = {}
for backend in backends:
params_no_caching = {
'algorithm': {
'name':
'VQE',
'operator_mode':
'matrix'
if backend == 'statevector_simulator' else 'paulis'
},
'problem': {
'name': 'energy',
'random_seed': 50,
'circuit_caching': False,
'skip_qobj_deepcopy': False,
'skip_qobj_validation': False,
'circuit_cache_file': None,
},
'backend': {
'provider': 'qiskit.BasicAer',
'name': backend
},
}
if backend != 'statevector_simulator':
params_no_caching['backend']['shots'] = 1000
params_no_caching['optimizer'] = {
'name': 'SPSA',
'max_trials': 15
}
qiskit_aqua = QiskitAqua(params_no_caching, self.algo_input)
res[backend] = qiskit_aqua.run()
self.reference_vqe_result = res
def test_vqe_caching_via_run_algorithm(self, backend, caching, skip_qobj_deepcopy):
self._build_refrence_result(backends=[backend])
skip_validation = True
params_caching = {
'algorithm': {'name': 'VQE'},
'problem': {'name': 'energy',
'random_seed': 50,
'circuit_optimization_level': self.optimization_level,
'circuit_caching': caching,
'skip_qobj_deepcopy': skip_qobj_deepcopy,
'skip_qobj_validation': skip_validation,
'circuit_cache_file': None,
},
'backend': {'provider': 'qiskit.BasicAer', 'name': backend},
}
if backend != 'statevector_simulator':
params_caching['backend']['shots'] = 1000
params_caching['optimizer'] = {'name': 'SPSA', 'max_trials': 15}
qiskit_aqua = QiskitAqua(params_caching, self.algo_input)
result_caching = qiskit_aqua.run()
self.assertAlmostEqual(result_caching['energy'], self.reference_vqe_result[backend]['energy'])
np.testing.assert_array_almost_equal(self.reference_vqe_result[backend]['eigvals'],
result_caching['eigvals'], 5)
np.testing.assert_array_almost_equal(self.reference_vqe_result[backend]['opt_params'],
result_caching['opt_params'], 5)
if qiskit_aqua.quantum_instance.has_circuit_caching:
self.assertEqual(qiskit_aqua.quantum_instance._circuit_cache.misses, 0)
self.assertIn('eval_count', result_caching)
self.assertIn('eval_time', result_caching)
def run_algorithm_from_json(params, output_file):
"""
Runs the Aqua Chemistry experiment from Qiskit Aqua json dictionary
Args:
params (dictionary): Qiskit Aqua json dictionary
output_file (filename): Output file name to save results
"""
qiskit_aqua = QiskitAqua(params)
ret = qiskit_aqua.run()
if not isinstance(ret, dict):
raise QiskitChemistryError('Algorithm run result should be a dictionary {}'.format(ret))
print('Output:')
pprint(ret, indent=4)
if output_file is not None:
with open(output_file, 'w') as out:
pprint(ret, stream=out, indent=4)
def __init__(self):
self.move = 0
self.data_file = 'data.csv'
self.data_path = 'PlayerLogic'
self.feature_dim = 9 # dimension of each data point
sample_Total, training_input, test_input, class_labels = VQCQPlayer.userDefinedData(
self.data_path,
self.data_file, ['0', '1', '2', '3', '4', '5', '6', '7', '8'],
training_size=6000,
test_size=500,
n=self.feature_dim,
PLOT_DATA=False)
temp = [test_input[k] for k in test_input]
total_array = np.concatenate(temp)
aqua_dict = {
'problem': {
'name': 'classification'
},
'algorithm': {
'name': 'SVM'
},
'multiclass_extension': {
'name': 'AllPairs'
}
}
algo_input = ClassificationInput(training_input, test_input,
total_array)
from qiskit.aqua import QiskitAqua
aqua_obj = QiskitAqua(aqua_dict, algo_input)
self.algo_obj = aqua_obj.quantum_algorithm
logger.info("Training the SVM....")
aqua_obj.run()
logger.info("Trained!")
def run_driver(self, params, backend=None):
"""
Runs the Qiskit Chemistry driver
Args:
params (Union(dictionary, filename)): Chemistry input data
backend (QuantumInstance or BaseBackend): the experimental settings
to be used in place of backend name
Raises:
QiskitChemistryError: Missing Input
"""
if params is None:
raise QiskitChemistryError("Missing input.")
self._operator = None
self._chemistry_result = None
self._qiskit_aqua = None
self._hdf5_file = None
self._parser = InputParser(params)
self._parser.parse()
# before merging defaults attempts to find a provider for the backend in case no
# provider was passed
if backend is None and \
self._parser.get_section_property(JSONSchema.BACKEND, JSONSchema.PROVIDER) is None:
backend_name = self._parser.get_section_property(
JSONSchema.BACKEND, JSONSchema.NAME)
if backend_name is not None:
self._parser.set_section_property(
JSONSchema.BACKEND, JSONSchema.PROVIDER,
get_provider_from_backend(backend_name))
# set provider and name in input file for proper backend schema dictionary build
if isinstance(backend, BaseBackend):
self._parser.backend = backend
self._parser.add_section_properties(
JSONSchema.BACKEND, {
JSONSchema.PROVIDER: get_provider_from_backend(backend),
JSONSchema.NAME: backend.name(),
})
self._parser.validate_merge_defaults()
experiment_name = "-- no &NAME section found --"
if JSONSchema.NAME in self._parser.get_section_names():
name_sect = self._parser.get_section(JSONSchema.NAME)
if name_sect is not None:
experiment_name = str(name_sect)
logger.info('Running chemistry problem from input file: %s',
self._parser.get_filename())
logger.info('Experiment description: %s', experiment_name.rstrip())
driver_name = self._parser.get_section_property(
InputParser.DRIVER, JSONSchema.NAME)
if driver_name is None:
raise QiskitChemistryError(
'Property "{0}" missing in section "{1}"'.format(
JSONSchema.NAME, InputParser.DRIVER))
self._hdf5_file = \
self._parser.get_section_property(InputParser.DRIVER, InputParser.HDF5_OUTPUT)
if driver_name not in local_drivers():
raise QiskitChemistryError(
'Driver "{0}" missing in local drivers'.format(driver_name))
work_path = None
input_file = self._parser.get_filename()
if input_file is not None:
work_path = os.path.dirname(os.path.realpath(input_file))
section = self._parser.get_section(driver_name)
driver = get_driver_class(driver_name).init_from_input(section)
driver.work_path = work_path
molecule = driver.run()
if work_path is not None and \
self._hdf5_file is not None and not os.path.isabs(self._hdf5_file):
self._hdf5_file = os.path.abspath(
os.path.join(work_path, self._hdf5_file))
molecule.log()
if self._hdf5_file is not None:
molecule.save(self._hdf5_file)
logger.info("HDF5 file saved '%s'", self._hdf5_file)
# Run the Hamiltonian to process the QMolecule and get an input for algorithms
clazz = get_chemistry_operator_class(
self._parser.get_section_property(InputParser.OPERATOR,
JSONSchema.NAME))
self._operator = clazz.init_params(
self._parser.get_section_properties(InputParser.OPERATOR))
qubit_op, aux_ops = self.operator.run(molecule)
input_object = EnergyInput(qubit_op, aux_ops)
logger.debug('Core computed substitution variables %s',
self.operator.molecule_info)
result = self._parser.process_substitutions(
self.operator.molecule_info)
logger.debug('Substitutions %s', result)
aqua_params = {}
for section_name, section in self._parser.get_sections().items():
if section_name == JSONSchema.NAME or \
section_name == InputParser.DRIVER or \
section_name == driver_name.lower() or \
section_name == InputParser.OPERATOR or \
not isinstance(section, dict):
continue
aqua_params[section_name] = copy.deepcopy(section)
if JSONSchema.PROBLEM == section_name and \
InputParser.AUTO_SUBSTITUTIONS in aqua_params[section_name]:
del aqua_params[section_name][InputParser.AUTO_SUBSTITUTIONS]
self._qiskit_aqua = QiskitAqua(aqua_params, input_object, backend)
'problem': {
'name': 'svm_classification'
},
'algorithm': {
'name': 'SVM'
},
'multiclass_extension': {
'name': 'AllPairs'
}
}
algo_input = SVMInput(training_input, test_input, total_array)
from qiskit.aqua import QiskitAqua
aqua_obj = QiskitAqua(aqua_dict, algo_input)
algo_obj = aqua_obj.quantum_algorithm
result = aqua_obj.run() #run_algorithm(aqua_dict, algo_input)
for k, v in result.items():
print("'{}' : {}".format(k, v))
# 6
to_predict = singleDataItem('', 'data.csv', [1, 2, 0, 0, 0, 0, 0, 1, 0], n=3)
print(algo_obj.predict(to_predict))
# 2
to_predict = singleDataItem('', 'data.csv', [1, 0, 1, 0, 0, 0, 0, 2, 0], n=3)
print(algo_obj.predict(to_predict))
# 1
