def list(args):
"""Retrieves a list of metabolites by experiment ID, platform ID
required parameters:
experimentID
platformID
:rtype: response json
:return: Returns a response object from the webservice in the json format if success raises exception otherwise
"""
# get list service url
svc_url = svc.get_list_base_url()
try:
# execute request
response = rh.build_payload(svc_url, args, 'list')
print json.dumps(response)
print '---'
except ValueError as e:
error_msg = "ValueError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except requests.exceptions.HTTPError as e:
error_msg = "HTTPError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except ConnectionError as e:
error_msg = "ConnectionError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
except Exception as e:
error_msg = "GenericError Exception:" + e.message
log.error(error_msg, exc_info=True)
raise Exception(error_msg)
def get_metabolites_as_json(url, args):
""" Retrieves all metabolites in json format
return platforms in json format
:type url: string
:param url: request url
:type args: string
:param args: request parameters
:rtype: list
:return: Returns list of Metabolite objects in json format if success raises exception otherwise
"""
response = rh.build_payload(url, args, 'list')
return response
