def list(args): """Retrieves a list of metabolites by experiment ID, platform ID required parameters: experimentID platformID :rtype: response json :return: Returns a response object from the webservice in the json format if success raises exception otherwise """ # get list service url svc_url = svc.get_list_base_url() try: # execute request response = rh.build_payload(svc_url, args, 'list') print json.dumps(response) print '---' except ValueError as e: error_msg = "ValueError Exception:" + e.message log.error(error_msg, exc_info=True) raise Exception(error_msg) except requests.exceptions.HTTPError as e: error_msg = "HTTPError Exception:" + e.message log.error(error_msg, exc_info=True) raise Exception(error_msg) except ConnectionError as e: error_msg = "ConnectionError Exception:" + e.message log.error(error_msg, exc_info=True) raise Exception(error_msg) except Exception as e: error_msg = "GenericError Exception:" + e.message log.error(error_msg, exc_info=True) raise Exception(error_msg)
def get_metabolites_as_json(url, args): """ Retrieves all metabolites in json format return platforms in json format :type url: string :param url: request url :type args: string :param args: request parameters :rtype: list :return: Returns list of Metabolite objects in json format if success raises exception otherwise """ response = rh.build_payload(url, args, 'list') return response