def verify(institute_id, case_name, variant_id, variant_category, order):
"""Start procedure to validate variant using other techniques."""
comment = request.form.get("verification_comment")
try:
variant_verification(
store=store,
institute_id=institute_id,
case_name=case_name,
comment=comment,
variant_id=variant_id,
sender=current_app.config.get("MAIL_USERNAME"),
variant_url=request.referrer,
order=order,
url_builder=url_for,
)
except MissingVerificationRecipientError:
flash("No verification recipients added to institute.", "danger")
return redirect(request.referrer)
def test_sanger_mail_sent(
app,
mock_mail,
real_variant_database,
institute_obj,
case_obj,
user_obj,
mock_sender,
mock_comment,
):
adapter = real_variant_database
## GIVEN we have a variant the we want to order sanger for
institute_id = institute_obj["_id"]
case_name = case_obj["display_name"]
variant_obj = adapter.variant_collection.find_one()
variant_obj["hgnc_symbols"] = ""
variant_obj["panels"] = ""
variant_id = variant_obj["document_id"]
## WHEN calling variant_verification method with order==True
with app.test_client() as client:
resp = client.get(url_for("auto_login"))
variant_verification(
adapter,
institute_id,
case_name,
variant_id,
mock_sender,
"complete_variant_url",
True,
mock_comment,
url_builder=mock_url_for,
mail=mock_mail,
user_obj=user_obj,
)
## THEN the supplied mail objects send method should have been called
assert mock_mail._send_was_called
## THEN the supplied mail objects send method should have received a message object
assert mock_mail._message
