def verify(institute_id, case_name, variant_id, variant_category, order): """Start procedure to validate variant using other techniques.""" comment = request.form.get("verification_comment") try: variant_verification( store=store, institute_id=institute_id, case_name=case_name, comment=comment, variant_id=variant_id, sender=current_app.config.get("MAIL_USERNAME"), variant_url=request.referrer, order=order, url_builder=url_for, ) except MissingVerificationRecipientError: flash("No verification recipients added to institute.", "danger") return redirect(request.referrer)
def test_sanger_mail_sent( app, mock_mail, real_variant_database, institute_obj, case_obj, user_obj, mock_sender, mock_comment, ): adapter = real_variant_database ## GIVEN we have a variant the we want to order sanger for institute_id = institute_obj["_id"] case_name = case_obj["display_name"] variant_obj = adapter.variant_collection.find_one() variant_obj["hgnc_symbols"] = "" variant_obj["panels"] = "" variant_id = variant_obj["document_id"] ## WHEN calling variant_verification method with order==True with app.test_client() as client: resp = client.get(url_for("auto_login")) variant_verification( adapter, institute_id, case_name, variant_id, mock_sender, "complete_variant_url", True, mock_comment, url_builder=mock_url_for, mail=mock_mail, user_obj=user_obj, ) ## THEN the supplied mail objects send method should have been called assert mock_mail._send_was_called ## THEN the supplied mail objects send method should have received a message object assert mock_mail._message