def test_addSnps_emptyFileSnpsRemainEmpty(): lineage_variant_file = TEST_CASE_DIR / "empty.tsv" lineage = Lineage() lineage.add_snps(lineage_variant_file) actual = lineage.snps expected = dict() assert actual == expected
def test_addSnps_realFileSnpsContainAllEntries(): lineage_variant_file = TEST_CASE_DIR / "test_lineage.tsv" lineage = Lineage() lineage.add_snps(lineage_variant_file) actual = lineage.snps expected = { 1011511: "C", 1022003: "C", 1028217: "A", 1034758: "T", 1071966: "G" } assert actual == expected