def figures_compare_time_based_features():
classifiers = utils.get_classifiers()
feature_sets = [
[FeatureType.count, FeatureType.heart_rate],
[FeatureType.count, FeatureType.heart_rate, FeatureType.time],
[FeatureType.count, FeatureType.heart_rate, FeatureType.cosine],
[
FeatureType.count, FeatureType.heart_rate,
FeatureType.circadian_model
]
]
trial_count = 50
for attributed_classifier in classifiers:
if Constants.VERBOSE:
print('Running ' + attributed_classifier.name + '...')
classifier_summary = SleepWakeClassifierSummaryBuilder.build_monte_carlo(
attributed_classifier, feature_sets, trial_count)
CurvePlotBuilder.make_roc_sw(classifier_summary, '_time_only')
CurvePlotBuilder.make_pr_sw(classifier_summary, '_time_only')
TableBuilder.print_table_sw(classifier_summary)
CurvePlotBuilder.combine_plots_as_grid(classifiers, trial_count,
'_time_only_sw_pr')
CurvePlotBuilder.combine_plots_as_grid(classifiers, trial_count,
'_time_only_sw_roc')
def test_make_pr_plot(self, mock_build_pr, mock_tidy_plot, mock_set_labels,
mock_plt):
performance_dictionary = {
tuple([FeatureType.count, FeatureType.heart_rate]):
['placeholder', 'for', 'raw', 'performances'],
tuple([FeatureType.count]):
['placeholder', 'for', 'raw', 'performances']
}
attributed_classifier = AttributedClassifier(
name="Logistic Regression", classifier=LogisticRegression())
classifier_summary = ClassifierSummary(
attributed_classifier=attributed_classifier,
performance_dictionary=performance_dictionary)
CurvePlotBuilder.make_pr_sw(classifier_summary)
mock_build_pr.assert_called_once_with(classifier_summary)
mock_tidy_plot.assert_called_once_with()
mock_set_labels.assert_called_once_with(
attributed_classifier, 'Fraction of wake scored as wake',
'Fraction of predicted wake correct', (0.5, 1.0))
mock_plt.savefig.assert_called_once_with(
str(
Constants.FIGURE_FILE_PATH.joinpath(
attributed_classifier.name + '_' + str(4) +
'__sw_pr.png')))
mock_plt.close.assert_called_once_with()
def figures_mc_sleep_wake():
classifiers = utils.get_classifiers()
feature_sets = utils.get_base_feature_sets()
trial_count = 20
for attributed_classifier in classifiers:
if Constants.VERBOSE:
print('Running ' + attributed_classifier.name + '...')
classifier_summary = SleepWakeClassifierSummaryBuilder.build_monte_carlo(
attributed_classifier, feature_sets, trial_count)
CurvePlotBuilder.make_roc_sw(classifier_summary)
CurvePlotBuilder.make_pr_sw(classifier_summary)
TableBuilder.print_table_sw(classifier_summary)
CurvePlotBuilder.combine_plots_as_grid(classifiers, trial_count, '_sw_pr')
CurvePlotBuilder.combine_plots_as_grid(classifiers, trial_count, '_sw_roc')
def figure_leave_one_out_roc_and_pr():
classifiers = utils.get_classifiers()
feature_sets = utils.get_base_feature_sets()
for attributed_classifier in classifiers:
if Constants.VERBOSE:
print('Running ' + attributed_classifier.name + '...')
classifier_summary = SleepWakeClassifierSummaryBuilder.build_leave_one_out(
attributed_classifier, feature_sets)
CurvePlotBuilder.make_roc_sw(classifier_summary)
CurvePlotBuilder.make_pr_sw(classifier_summary)
TableBuilder.print_table_sw(classifier_summary)
CurvePlotBuilder.combine_plots_as_grid(
classifiers, len(SubjectBuilder.get_all_subject_ids()), '_sw_pr')
CurvePlotBuilder.combine_plots_as_grid(
classifiers, len(SubjectBuilder.get_all_subject_ids()), '_sw_roc')
def figures_mesa_sleep_wake():
classifiers = utils.get_classifiers()
# Uncomment to just use MLP:
# classifiers = [AttributedClassifier(name='Neural Net',
# classifier=MLPClassifier(activation='relu', hidden_layer_sizes=(15, 15, 15),
# max_iter=1000, alpha=0.01, solver='lbfgs'))]
feature_sets = utils.get_base_feature_sets()
for attributed_classifier in classifiers:
if Constants.VERBOSE:
print('Running ' + attributed_classifier.name + '...')
classifier_summary = SleepWakeClassifierSummaryBuilder.build_mesa(
attributed_classifier, feature_sets)
CurvePlotBuilder.make_roc_sw(classifier_summary, '_mesa')
CurvePlotBuilder.make_pr_sw(classifier_summary, '_mesa')
TableBuilder.print_table_sw(classifier_summary)
CurvePlotBuilder.combine_plots_as_grid(classifiers, 1, '_mesa_sw_pr')
CurvePlotBuilder.combine_plots_as_grid(classifiers, 1, '_mesa_sw_roc')