def main():
# initialization
param = ParamMoco(is_diffusion=True, group_size=3, metric='MI', smooth='1')
# Fetch user arguments
parser = get_parser()
arguments = parser.parse(sys.argv[1:])
param.fname_data = arguments['-i']
param.fname_bvecs = os.path.abspath(arguments['-bvec'])
if '-bval' in arguments:
param.fname_bvals = os.path.abspath(arguments['-bval'])
if '-bvalmin' in arguments:
param.bval_min = arguments['-bvalmin']
if '-g' in arguments:
param.group_size = arguments['-g']
if '-m' in arguments:
param.fname_mask = arguments['-m']
if '-param' in arguments:
param.update(arguments['-param'])
if '-x' in arguments:
param.interp = arguments['-x']
if '-ofolder' in arguments:
param.path_out = arguments['-ofolder']
if '-r' in arguments:
param.remove_temp_files = int(arguments['-r'])
param.verbose = int(arguments.get('-v'))
# Update log level
sct.init_sct(log_level=param.verbose, update=True)
# run moco
moco_wrapper(param)
def main():
# initialization
param = ParamMoco(group_size=1, metric='MeanSquares', smooth='0')
# Fetch user arguments
parser = get_parser()
arguments = parser.parse_args(args=None if sys.argv[1:] else ['--help'])
param.fname_data = arguments.i
param.path_out = arguments.ofolder
param.remove_temp_files = arguments.r
param.interp = arguments.x
if arguments.g is not None:
param.group_size = arguments.g
if arguments.m is not None:
param.fname_mask = arguments.m
if arguments.param is not None:
param.update(arguments.param)
param.verbose = int(arguments.v)
# Update log level
init_sct(log_level=param.verbose, update=True)
# run moco
moco_wrapper(param)
def main():
# initialization
param = ParamMoco(group_size=1, metric='MeanSquares', smooth='0')
# Fetch user arguments
parser = get_parser()
arguments = parser.parse(sys.argv[1:])
param.fname_data = arguments['-i']
if '-g' in arguments:
param.group_size = arguments['-g']
if '-m' in arguments:
param.fname_mask = arguments['-m']
if '-param' in arguments:
param.update(arguments['-param'])
if '-x' in arguments:
param.interp = arguments['-x']
if '-ofolder' in arguments:
param.path_out = arguments['-ofolder']
if '-r' in arguments:
param.remove_temp_files = int(arguments['-r'])
param.verbose = int(arguments.get('-v'))
# Update log level
sct.init_sct(log_level=param.verbose, update=True)
# run moco
moco_wrapper(param)
def main():
# initialization
param = ParamMoco(is_diffusion=True, group_size=3, metric='MI', smooth='1')
# Fetch user arguments
parser = get_parser()
arguments = parser.parse_args(args=None if sys.argv[1:] else ['--help'])
param.fname_data = arguments.i
param.fname_bvecs = os.path.abspath(arguments.bvec)
param.fname_bvals = arguments.bval
param.bval_min = arguments.bvalmin
param.group_size = arguments.g
param.fname_mask = arguments.m
param.interp = arguments.x
param.path_out = arguments.ofolder
param.remove_temp_files = arguments.r
if arguments.param is not None:
param.update(arguments.param)
param.verbose = int(arguments.v)
# Update log level
init_sct(log_level=param.verbose, update=True)
# run moco
moco_wrapper(param)
